From b03ed224a4329bd4bbf1407024f85609af7186db Mon Sep 17 00:00:00 2001 From: Darshan beladiya <42748893+beladiyadarshan@users.noreply.github.com> Date: Tue, 15 Dec 2020 22:42:07 +0530 Subject: [PATCH 01/33] Create dummy.txt --- medical-ocr-poc/dummy.txt | 1 + 1 file changed, 1 insertion(+) create mode 100644 medical-ocr-poc/dummy.txt diff --git a/medical-ocr-poc/dummy.txt b/medical-ocr-poc/dummy.txt new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/medical-ocr-poc/dummy.txt @@ -0,0 +1 @@ + From d74df7bc3e02ec75a882e94f997bf382ba494869 Mon Sep 17 00:00:00 2001 From: Darshan beladiya <42748893+beladiyadarshan@users.noreply.github.com> Date: Tue, 15 Dec 2020 22:46:12 +0530 Subject: [PATCH 02/33] Add files via upload --- medical-ocr-poc/README.md | 22 + medical-ocr-poc/build/build.js | 41 + medical-ocr-poc/build/check-versions.js | 54 + medical-ocr-poc/build/logo.png | Bin 0 -> 6849 bytes medical-ocr-poc/build/utils.js | 101 + medical-ocr-poc/build/vue-loader.conf.js | 22 + medical-ocr-poc/build/webpack.base.conf.js | 82 + medical-ocr-poc/build/webpack.dev.conf.js | 95 + medical-ocr-poc/build/webpack.prod.conf.js | 145 + medical-ocr-poc/config/dev.env.js | 7 + medical-ocr-poc/config/index.js | 69 + medical-ocr-poc/config/prod.env.js | 4 + medical-ocr-poc/deploy | 9 + medical-ocr-poc/index.html | 12 + medical-ocr-poc/package-lock.json | 11777 +++++++++++++++++++ medical-ocr-poc/package.json | 65 + medical-ocr-poc/src/App.vue | 22 + medical-ocr-poc/src/assets/logo.png | Bin 0 -> 6849 bytes medical-ocr-poc/src/components/Main.vue | 113 + medical-ocr-poc/src/main.js | 19 + medical-ocr-poc/src/router/index.js | 15 + 21 files changed, 12674 insertions(+) create mode 100644 medical-ocr-poc/README.md create mode 100644 medical-ocr-poc/build/build.js create mode 100644 medical-ocr-poc/build/check-versions.js create mode 100644 medical-ocr-poc/build/logo.png create mode 100644 medical-ocr-poc/build/utils.js create mode 100644 medical-ocr-poc/build/vue-loader.conf.js create mode 100644 medical-ocr-poc/build/webpack.base.conf.js create mode 100644 medical-ocr-poc/build/webpack.dev.conf.js create mode 100644 medical-ocr-poc/build/webpack.prod.conf.js create mode 100644 medical-ocr-poc/config/dev.env.js create mode 100644 medical-ocr-poc/config/index.js create mode 100644 medical-ocr-poc/config/prod.env.js create mode 100644 medical-ocr-poc/deploy create mode 100644 medical-ocr-poc/index.html create mode 100644 medical-ocr-poc/package-lock.json create mode 100644 medical-ocr-poc/package.json create mode 100644 medical-ocr-poc/src/App.vue create mode 100644 medical-ocr-poc/src/assets/logo.png create mode 100644 medical-ocr-poc/src/components/Main.vue create mode 100644 medical-ocr-poc/src/main.js create mode 100644 medical-ocr-poc/src/router/index.js diff --git a/medical-ocr-poc/README.md b/medical-ocr-poc/README.md new file mode 100644 index 0000000..b1bb03e --- /dev/null +++ b/medical-ocr-poc/README.md @@ -0,0 +1,22 @@ +# ocr-paper + +> A Vue.js project + +## Build Setup + +``` bash +# install dependencies +npm install + +# serve with hot reload at localhost:8080 +npm run dev + +# build for production with minification +npm run build + +# build for production and view the bundle analyzer report +npm run build --report +``` + +For a detailed explanation on how things work, check out the [guide](http://vuejs-templates.github.io/webpack/) and [docs for vue-loader](http://vuejs.github.io/vue-loader). +> diff --git a/medical-ocr-poc/build/build.js b/medical-ocr-poc/build/build.js new file mode 100644 index 0000000..8f2ad8a --- /dev/null +++ b/medical-ocr-poc/build/build.js @@ -0,0 +1,41 @@ +'use strict' +require('./check-versions')() + +process.env.NODE_ENV = 'production' + +const ora = require('ora') +const rm = require('rimraf') +const path = require('path') +const chalk = require('chalk') +const webpack = require('webpack') +const config = require('../config') +const webpackConfig = require('./webpack.prod.conf') + +const spinner = ora('building for production...') +spinner.start() + +rm(path.join(config.build.assetsRoot, config.build.assetsSubDirectory), err => { + if (err) throw err + webpack(webpackConfig, (err, stats) => { + spinner.stop() + if (err) throw err + process.stdout.write(stats.toString({ + colors: true, + modules: false, + children: false, // If you are using ts-loader, setting this to true will make TypeScript errors show up during build. + chunks: false, + chunkModules: false + }) + '\n\n') + + if (stats.hasErrors()) { + console.log(chalk.red(' Build failed with errors.\n')) + process.exit(1) + } + + console.log(chalk.cyan(' Build complete.\n')) + console.log(chalk.yellow( + ' Tip: built files are meant to be served over an HTTP server.\n' + + ' Opening index.html over file:// won\'t work.\n' + )) + }) +}) diff --git a/medical-ocr-poc/build/check-versions.js b/medical-ocr-poc/build/check-versions.js new file mode 100644 index 0000000..3ef972a --- /dev/null +++ b/medical-ocr-poc/build/check-versions.js @@ -0,0 +1,54 @@ +'use strict' +const chalk = require('chalk') +const semver = require('semver') +const packageConfig = require('../package.json') +const shell = require('shelljs') + +function exec (cmd) { + return require('child_process').execSync(cmd).toString().trim() +} + +const versionRequirements = [ + { + name: 'node', + currentVersion: semver.clean(process.version), + versionRequirement: packageConfig.engines.node + } +] + +if (shell.which('npm')) { + versionRequirements.push({ + name: 'npm', + currentVersion: exec('npm --version'), + versionRequirement: packageConfig.engines.npm + }) +} + +module.exports = function () { + const warnings = [] + + for (let i = 0; i < versionRequirements.length; i++) { + const mod = versionRequirements[i] + + if (!semver.satisfies(mod.currentVersion, mod.versionRequirement)) { + warnings.push(mod.name + ': ' + + chalk.red(mod.currentVersion) + ' should be ' + + 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config.build.productionSourceMap + : config.dev.cssSourceMap + +module.exports = { + loaders: utils.cssLoaders({ + sourceMap: sourceMapEnabled, + extract: isProduction + }), + cssSourceMap: sourceMapEnabled, + cacheBusting: config.dev.cacheBusting, + transformToRequire: { + video: ['src', 'poster'], + source: 'src', + img: 'src', + image: 'xlink:href' + } +} diff --git a/medical-ocr-poc/build/webpack.base.conf.js b/medical-ocr-poc/build/webpack.base.conf.js new file mode 100644 index 0000000..a07e683 --- /dev/null +++ b/medical-ocr-poc/build/webpack.base.conf.js @@ -0,0 +1,82 @@ +'use strict' +const path = require('path') +const utils = require('./utils') +const config = require('../config') +const vueLoaderConfig = require('./vue-loader.conf') + +function resolve (dir) { + return path.join(__dirname, '..', dir) +} + + + +module.exports = { + context: path.resolve(__dirname, '../'), + entry: { + app: './src/main.js' + }, + output: { + path: config.build.assetsRoot, + filename: '[name].js', + publicPath: process.env.NODE_ENV === 'production' + ? config.build.assetsPublicPath + : config.dev.assetsPublicPath + }, + resolve: { + extensions: ['.js', '.vue', '.json'], + alias: { + 'vue$': 'vue/dist/vue.esm.js', + '@': resolve('src'), + } + }, + module: { + rules: [ + { + test: /\.vue$/, + loader: 'vue-loader', + options: vueLoaderConfig + }, + { + test: /\.js$/, + loader: 'babel-loader', + include: [resolve('src'), resolve('test'), resolve('node_modules/webpack-dev-server/client')] + }, + { + test: /\.(png|jpe?g|gif|svg)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('img/[name].[hash:7].[ext]') + } + }, + { + test: /\.(mp4|webm|ogg|mp3|wav|flac|aac)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('media/[name].[hash:7].[ext]') + } + }, + { + test: /\.(woff2?|eot|ttf|otf)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('fonts/[name].[hash:7].[ext]') + } + } + ] + }, + node: { + // prevent webpack from injecting useless setImmediate polyfill because Vue + // source contains it (although only uses it if it's native). + setImmediate: false, + // prevent webpack from injecting mocks to Node native modules + // that does not make sense for the client + dgram: 'empty', + fs: 'empty', + net: 'empty', + tls: 'empty', + child_process: 'empty' + } +} diff --git a/medical-ocr-poc/build/webpack.dev.conf.js b/medical-ocr-poc/build/webpack.dev.conf.js new file mode 100644 index 0000000..070ae22 --- /dev/null +++ b/medical-ocr-poc/build/webpack.dev.conf.js @@ -0,0 +1,95 @@ +'use strict' +const utils = require('./utils') +const webpack = require('webpack') +const config = require('../config') +const merge = require('webpack-merge') +const path = require('path') +const baseWebpackConfig = require('./webpack.base.conf') +const CopyWebpackPlugin = require('copy-webpack-plugin') +const HtmlWebpackPlugin = require('html-webpack-plugin') +const FriendlyErrorsPlugin = require('friendly-errors-webpack-plugin') +const portfinder = require('portfinder') + +const HOST = process.env.HOST +const PORT = process.env.PORT && Number(process.env.PORT) + +const devWebpackConfig = merge(baseWebpackConfig, { + module: { + rules: utils.styleLoaders({ sourceMap: config.dev.cssSourceMap, usePostCSS: true }) + }, + // cheap-module-eval-source-map is faster for development + devtool: config.dev.devtool, + + // these devServer options should be customized in /config/index.js + devServer: { + clientLogLevel: 'warning', + historyApiFallback: { + rewrites: [ + { from: /.*/, to: path.posix.join(config.dev.assetsPublicPath, 'index.html') }, + ], + }, + hot: true, + contentBase: false, // since we use CopyWebpackPlugin. + compress: true, + host: HOST || config.dev.host, + port: PORT || config.dev.port, + open: config.dev.autoOpenBrowser, + overlay: config.dev.errorOverlay + ? { warnings: false, errors: true } + : false, + publicPath: config.dev.assetsPublicPath, + proxy: config.dev.proxyTable, + quiet: true, // necessary for FriendlyErrorsPlugin + watchOptions: { + poll: config.dev.poll, + } + }, + plugins: [ + new webpack.DefinePlugin({ + 'process.env': require('../config/dev.env') + }), + new webpack.HotModuleReplacementPlugin(), + new webpack.NamedModulesPlugin(), // HMR shows correct file names in console on update. + new webpack.NoEmitOnErrorsPlugin(), + // https://github.com/ampedandwired/html-webpack-plugin + new HtmlWebpackPlugin({ + filename: 'index.html', + template: 'index.html', + inject: true + }), + // copy custom static assets + new CopyWebpackPlugin([ + { + from: path.resolve(__dirname, '../static'), + to: config.dev.assetsSubDirectory, + ignore: ['.*'] + } + ]) + ] +}) + +module.exports = new Promise((resolve, reject) => { + portfinder.basePort = process.env.PORT || config.dev.port + portfinder.getPort((err, port) => { + if (err) { + reject(err) + } else { + // publish the new Port, necessary for e2e tests + process.env.PORT = port + // add port to devServer config + devWebpackConfig.devServer.port = port + + // Add FriendlyErrorsPlugin + devWebpackConfig.plugins.push(new FriendlyErrorsPlugin({ + compilationSuccessInfo: { + messages: [`Your application is running here: http://${devWebpackConfig.devServer.host}:${port}`], + }, + onErrors: config.dev.notifyOnErrors + ? utils.createNotifierCallback() + : undefined + })) + + resolve(devWebpackConfig) + } + }) +}) diff --git a/medical-ocr-poc/build/webpack.prod.conf.js b/medical-ocr-poc/build/webpack.prod.conf.js new file mode 100644 index 0000000..d9f99f6 --- /dev/null +++ b/medical-ocr-poc/build/webpack.prod.conf.js @@ -0,0 +1,145 @@ +'use strict' +const path = require('path') +const utils = require('./utils') +const webpack = require('webpack') +const config = require('../config') +const merge = require('webpack-merge') +const baseWebpackConfig = require('./webpack.base.conf') +const CopyWebpackPlugin = require('copy-webpack-plugin') +const HtmlWebpackPlugin = require('html-webpack-plugin') +const ExtractTextPlugin = require('extract-text-webpack-plugin') +const OptimizeCSSPlugin = require('optimize-css-assets-webpack-plugin') +const UglifyJsPlugin = require('uglifyjs-webpack-plugin') + +const env = require('../config/prod.env') + +const webpackConfig = merge(baseWebpackConfig, { + module: { + rules: utils.styleLoaders({ + sourceMap: config.build.productionSourceMap, + extract: true, + usePostCSS: true + }) + }, + devtool: config.build.productionSourceMap ? config.build.devtool : false, + output: { + path: config.build.assetsRoot, + filename: utils.assetsPath('js/[name].[chunkhash].js'), + chunkFilename: utils.assetsPath('js/[id].[chunkhash].js') + }, + plugins: [ + // http://vuejs.github.io/vue-loader/en/workflow/production.html + new webpack.DefinePlugin({ + 'process.env': env + }), + new UglifyJsPlugin({ + uglifyOptions: { + compress: { + warnings: false + } + }, + sourceMap: config.build.productionSourceMap, + parallel: true + }), + // extract css into its own file + new ExtractTextPlugin({ + filename: utils.assetsPath('css/[name].[contenthash].css'), + // Setting the following option to `false` will not extract CSS from codesplit chunks. + // Their CSS will instead be inserted dynamically with style-loader when the codesplit chunk has been loaded by webpack. + // It's currently set to `true` because we are seeing that sourcemaps are included in the codesplit bundle as well when it's `false`, + // increasing file size: https://github.com/vuejs-templates/webpack/issues/1110 + allChunks: true, + }), + // Compress extracted CSS. We are using this plugin so that possible + // duplicated CSS from different components can be deduped. + new OptimizeCSSPlugin({ + cssProcessorOptions: config.build.productionSourceMap + ? { safe: true, map: { inline: false } } + : { safe: true } + }), + // generate dist index.html with correct asset hash for caching. + // you can customize output by editing /index.html + // see https://github.com/ampedandwired/html-webpack-plugin + new HtmlWebpackPlugin({ + filename: config.build.index, + template: 'index.html', + inject: true, + minify: { + removeComments: true, + collapseWhitespace: true, + removeAttributeQuotes: true + // more options: + // https://github.com/kangax/html-minifier#options-quick-reference + }, + // necessary to consistently work with multiple chunks via CommonsChunkPlugin + chunksSortMode: 'dependency' + }), + // keep module.id stable when vendor modules does not change + new webpack.HashedModuleIdsPlugin(), + // enable scope hoisting + new webpack.optimize.ModuleConcatenationPlugin(), + // split vendor js into its own file + new webpack.optimize.CommonsChunkPlugin({ + name: 'vendor', + minChunks (module) { + // any required modules inside node_modules are extracted to vendor + return ( + module.resource && + /\.js$/.test(module.resource) && + module.resource.indexOf( + path.join(__dirname, '../node_modules') + ) === 0 + ) + } + }), + // extract webpack runtime and module manifest to its own file in order to + // prevent vendor hash from being updated whenever app bundle is updated + new webpack.optimize.CommonsChunkPlugin({ + name: 'manifest', + minChunks: Infinity + }), + // This instance extracts shared chunks from code splitted chunks and bundles them + // in a separate chunk, similar to the vendor chunk + // see: https://webpack.js.org/plugins/commons-chunk-plugin/#extra-async-commons-chunk + new webpack.optimize.CommonsChunkPlugin({ + name: 'app', + async: 'vendor-async', + children: true, + minChunks: 3 + }), + + // copy custom static assets + new CopyWebpackPlugin([ + { + from: path.resolve(__dirname, '../static'), + to: config.build.assetsSubDirectory, + ignore: ['.*'] + } + ]) + ] +}) + +if (config.build.productionGzip) { + const CompressionWebpackPlugin = require('compression-webpack-plugin') + + webpackConfig.plugins.push( + new CompressionWebpackPlugin({ + asset: '[path].gz[query]', + algorithm: 'gzip', + test: new RegExp( + '\\.(' + + config.build.productionGzipExtensions.join('|') + + ')$' + ), + threshold: 10240, + minRatio: 0.8 + }) + ) +} + +if (config.build.bundleAnalyzerReport) { + const BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin + webpackConfig.plugins.push(new BundleAnalyzerPlugin()) +} + +module.exports = webpackConfig diff --git a/medical-ocr-poc/config/dev.env.js b/medical-ocr-poc/config/dev.env.js new file mode 100644 index 0000000..1e22973 --- /dev/null +++ b/medical-ocr-poc/config/dev.env.js @@ -0,0 +1,7 @@ +'use strict' +const merge = require('webpack-merge') +const prodEnv = require('./prod.env') + +module.exports = merge(prodEnv, { + NODE_ENV: '"development"' +}) diff --git a/medical-ocr-poc/config/index.js b/medical-ocr-poc/config/index.js new file mode 100644 index 0000000..c5eded7 --- /dev/null +++ b/medical-ocr-poc/config/index.js @@ -0,0 +1,69 @@ +'use strict' +// Template version: 1.3.1 +// see http://vuejs-templates.github.io/webpack for documentation. + +const path = require('path') + +module.exports = { + dev: { + + // Paths + assetsSubDirectory: 'static', + assetsPublicPath: '/', + proxyTable: {}, + + // Various Dev Server settings + host: 'localhost', // can be overwritten by process.env.HOST + port: 8080, // can be overwritten by process.env.PORT, if port is in use, a free one will be determined + autoOpenBrowser: false, + errorOverlay: true, + notifyOnErrors: true, + poll: false, // https://webpack.js.org/configuration/dev-server/#devserver-watchoptions- + + + /** + * Source Maps + */ + + // https://webpack.js.org/configuration/devtool/#development + devtool: 'cheap-module-eval-source-map', + + // If you have problems debugging vue-files in devtools, + // set this to false - it *may* help + // https://vue-loader.vuejs.org/en/options.html#cachebusting + cacheBusting: true, + + cssSourceMap: true + }, + + build: { + // Template for index.html + index: path.resolve(__dirname, '../dist/index.html'), + + // Paths + assetsRoot: path.resolve(__dirname, '../dist'), + assetsSubDirectory: 'static', + assetsPublicPath: '/', + + /** + * Source Maps + */ + + productionSourceMap: true, + // https://webpack.js.org/configuration/devtool/#production + devtool: '#source-map', + + // Gzip off by default as many popular static hosts such as + // Surge or Netlify already gzip all static assets for you. + // Before setting to `true`, make sure to: + // npm install --save-dev compression-webpack-plugin + productionGzip: false, + productionGzipExtensions: ['js', 'css'], + + // Run the build command with an extra argument to + // View the bundle analyzer report after build finishes: + // `npm run build --report` + // Set to `true` or `false` to always turn it on or off + bundleAnalyzerReport: process.env.npm_config_report + } +} diff --git a/medical-ocr-poc/config/prod.env.js b/medical-ocr-poc/config/prod.env.js new file mode 100644 index 0000000..a6f9976 --- /dev/null +++ b/medical-ocr-poc/config/prod.env.js @@ -0,0 +1,4 @@ +'use strict' +module.exports = { + NODE_ENV: '"production"' +} diff --git a/medical-ocr-poc/deploy b/medical-ocr-poc/deploy new file mode 100644 index 0000000..4f461b1 --- /dev/null +++ b/medical-ocr-poc/deploy @@ -0,0 +1,9 @@ +#!/bin/bash + +set -ex + +npm run build + +cd dist + +surge \ No newline at end of file diff --git a/medical-ocr-poc/index.html b/medical-ocr-poc/index.html new file mode 100644 index 0000000..3366c83 --- /dev/null +++ b/medical-ocr-poc/index.html @@ -0,0 +1,12 @@ + + + + + + ocr-paper + + +
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+ + +

Step 1: Upload

+ + +
Drop file here or click to upload
+
Only PDF files are allowed.
+ + Upload to server + + +

Result

+ +
+
+ + +

+ +
+
+

Text

+ +
+
+ Please select PDF first + + +
+ + + + + \ No newline at end of file diff --git a/medical-ocr-poc/src/main.js b/medical-ocr-poc/src/main.js new file mode 100644 index 0000000..0e4f714 --- /dev/null +++ b/medical-ocr-poc/src/main.js @@ -0,0 +1,19 @@ +// The Vue build version to load with the `import` command +// (runtime-only or standalone) has been set in webpack.base.conf with an alias. +import Vue from 'vue' +import App from './App' +import router from './router' +import ElementUI from 'element-ui'; +import 'element-ui/lib/theme-chalk/index.css'; + +Vue.config.productionTip = false + +Vue.use(ElementUI); + +/* eslint-disable no-new */ +new Vue({ + el: '#app', + router, + components: { App }, + template: '' +}) diff --git a/medical-ocr-poc/src/router/index.js b/medical-ocr-poc/src/router/index.js new file mode 100644 index 0000000..6819e45 --- /dev/null +++ b/medical-ocr-poc/src/router/index.js @@ -0,0 +1,15 @@ +import Vue from 'vue' +import Router from 'vue-router' +import Main from '@/components/Main' + +Vue.use(Router) + +export default new Router({ + routes: [ + { + path: '/', + name: 'Main', + component: Main + } + ] +}) From 019a850c92f8f51358c45f4684e9ff951b582866 Mon Sep 17 00:00:00 2001 From: Darshan beladiya <42748893+beladiyadarshan@users.noreply.github.com> Date: Tue, 15 Dec 2020 22:47:42 +0530 Subject: [PATCH 03/33] Create dummy.txt --- ocr-api/dummy.txt | 1 + 1 file changed, 1 insertion(+) create mode 100644 ocr-api/dummy.txt diff --git a/ocr-api/dummy.txt b/ocr-api/dummy.txt new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/ocr-api/dummy.txt @@ -0,0 +1 @@ + From 59c74ac66a60234410b1dba74a547bc3e75a1dd9 Mon Sep 17 00:00:00 2001 From: Darshan beladiya <42748893+beladiyadarshan@users.noreply.github.com> Date: Tue, 15 Dec 2020 22:52:47 +0530 Subject: [PATCH 04/33] Add files via upload --- ocr-api/Dockerfile | 29 +++ ocr-api/__pycache__/app.cpython-36.pyc | Bin 0 -> 2070 bytes ocr-api/__pycache__/app.cpython-38.pyc | Bin 0 -> 1952 bytes ocr-api/__pycache__/wsgi.cpython-36.pyc | Bin 0 -> 170 bytes ocr-api/__pycache__/wsgi.cpython-38.pyc | Bin 0 -> 178 bytes ocr-api/app.py | 81 ++++++++ ocr-api/default | 41 ++++ ocr-api/docker-compose.yml | 18 ++ ocr-api/docker-compose.yml.example | 18 ++ .../__pycache__/__init__.cpython-36.pyc | Bin 0 -> 113 bytes .../__pycache__/__init__.cpython-38.pyc | Bin 0 -> 121 bytes .../__pycache__/format1.cpython-36.pyc | Bin 0 -> 3365 bytes .../__pycache__/format1.cpython-38.pyc | Bin 0 -> 1077 bytes .../__pycache__/format2.cpython-36.pyc | Bin 0 -> 744 bytes .../__pycache__/format2.cpython-38.pyc | Bin 0 -> 750 bytes .../__pycache__/format3.cpython-36.pyc | Bin 0 -> 800 bytes .../__pycache__/format3.cpython-38.pyc | Bin 0 -> 806 bytes .../__pycache__/format4.cpython-36.pyc | Bin 0 -> 1321 bytes .../__pycache__/format4.cpython-38.pyc | Bin 0 -> 1317 bytes .../__pycache__/format5.cpython-36.pyc | Bin 0 -> 11815 bytes .../__pycache__/format5.cpython-38.pyc | Bin 0 -> 11393 bytes ocr-api/extractor/format1.py | 179 ++++++++++++++++++ ocr-api/extractor/format2.py | 27 +++ ocr-api/extractor/format3.py | 54 ++++++ ocr-api/extractor/format4.py | 64 +++++++ ocr-api/nginx.conf | 28 +++ .../__pycache__/__init__.cpython-36.pyc | Bin 0 -> 110 bytes .../__pycache__/__init__.cpython-38.pyc | Bin 0 -> 118 bytes .../parser/__pycache__/parser.cpython-36.pyc | Bin 0 -> 1231 bytes .../parser/__pycache__/parser.cpython-38.pyc | Bin 0 -> 1297 bytes ocr-api/parser/parser.py | 41 ++++ ocr-api/requirements.txt | 12 ++ ocr-api/wsgi.py | 4 + 33 files changed, 596 insertions(+) create mode 100644 ocr-api/Dockerfile create mode 100644 ocr-api/__pycache__/app.cpython-36.pyc create mode 100644 ocr-api/__pycache__/app.cpython-38.pyc create mode 100644 ocr-api/__pycache__/wsgi.cpython-36.pyc create mode 100644 ocr-api/__pycache__/wsgi.cpython-38.pyc create mode 100644 ocr-api/app.py create mode 100644 ocr-api/default create mode 100644 ocr-api/docker-compose.yml create mode 100644 ocr-api/docker-compose.yml.example create mode 100644 ocr-api/extractor/__pycache__/__init__.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/__init__.cpython-38.pyc create mode 100644 ocr-api/extractor/__pycache__/format1.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/format1.cpython-38.pyc create mode 100644 ocr-api/extractor/__pycache__/format2.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/format2.cpython-38.pyc create mode 100644 ocr-api/extractor/__pycache__/format3.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/format3.cpython-38.pyc create mode 100644 ocr-api/extractor/__pycache__/format4.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/format4.cpython-38.pyc create mode 100644 ocr-api/extractor/__pycache__/format5.cpython-36.pyc create mode 100644 ocr-api/extractor/__pycache__/format5.cpython-38.pyc create mode 100644 ocr-api/extractor/format1.py create mode 100644 ocr-api/extractor/format2.py create mode 100644 ocr-api/extractor/format3.py create mode 100644 ocr-api/extractor/format4.py create mode 100644 ocr-api/nginx.conf create mode 100644 ocr-api/parser/__pycache__/__init__.cpython-36.pyc create mode 100644 ocr-api/parser/__pycache__/__init__.cpython-38.pyc create mode 100644 ocr-api/parser/__pycache__/parser.cpython-36.pyc create mode 100644 ocr-api/parser/__pycache__/parser.cpython-38.pyc create mode 100644 ocr-api/parser/parser.py create mode 100644 ocr-api/requirements.txt create mode 100644 ocr-api/wsgi.py diff --git a/ocr-api/Dockerfile b/ocr-api/Dockerfile new file mode 100644 index 0000000..c4daa5f --- /dev/null +++ b/ocr-api/Dockerfile @@ -0,0 +1,29 @@ +FROM ubuntu:18.04 + + +RUN apt-get update --fix-missing +RUN apt-get upgrade -y + +RUN apt-get install -y libsm6 libxext6 libxrender-dev libleptonica-dev liblept5 +RUN apt-get -y install nginx \ + && apt-get -y install python3-dev \ + && apt-get -y install build-essential \ + && apt-get -y install python3-pip \ + && apt-get -y install software-properties-common \ + && add-apt-repository -y ppa:alex-p/tesseract-ocr \ + && apt-get -y update \ + && apt-get -y install tesseract-ocr \ + && apt-get -y install curl \ + && apt-get -y install poppler-utils + +WORKDIR /project + +COPY ./requirements.txt /project/requirements.txt + +RUN pip3 install -r requirements.txt + +COPY ./ /project/ + +COPY ./default /etc/nginx/sites-available/ + +CMD ["gunicorn", "-b", "0.0.0.0:5001", "--workers=3", "--threads=3", "-t", "90", "--error-logfile", "/project/err.log", "--log-level=debug", "wsgi:app"] diff --git a/ocr-api/__pycache__/app.cpython-36.pyc b/ocr-api/__pycache__/app.cpython-36.pyc new file mode 100644 index 0000000000000000000000000000000000000000..d718429844caa934b9f8838fc33fcf8cb8e8bcf9 GIT binary patch literal 2070 zcmbVNOK%)S5bmDWj`!tfvbGbzNJL~o*g+s3k`-ZWCqy#d$m`c0Q zO>FJLVRL|kCAjCxfdl`86KB-o1Sj7)`GBZuC(45xv+C;VM^#sS_1O0sjp|R|{vQ6~ z6Y>{%?sI|v1cv+v2qTPUB)FJqK+W0;EHm4I4YQRwxf{5-7kGIks8GCXXMR2rOc>tD 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C>aWuP literal 0 HcmV?d00001 diff --git a/ocr-api/extractor/format1.py b/ocr-api/extractor/format1.py new file mode 100644 index 0000000..4f867b7 --- /dev/null +++ b/ocr-api/extractor/format1.py @@ -0,0 +1,179 @@ +import re + + +def extract_details_format1(text): + name_regex = r"Patient Information\n([a-zA-Z0-9, ]+)" + name_search = re.search(name_regex, text).groups() + + if name_search != None: + name = str(name_search[0]) + + name = " ".join(name.strip().split(",")[::-1]).strip() + # gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" + # gender_search = re.search(gender_regex, text).groups() + + # if gender_search != None: + # gender = str(gender_search[0]) + + # gender = gender.strip() + phone_search = re.search(r"(\([\d]+\) [\d]+\-[\d]+)", text).groups() + print(phone_search) + if phone_search != None: + phone = str(phone_search[0]) + + + phone = phone.strip() + + + dob_regex = r"Birth Date\n([A-Za-z0-9, ]+)" + dob_search = re.search(dob_regex, text).groups() + + if dob_search != None: + dob = str(dob_search[0]) + + dob = dob.strip() + + height_search=re.search(r"Height:\n([\d]+)", text).groups() + if height_search != None: + height = str(height_search[0]) + height = height.strip() + + weight_search=re.search(r"Weight:\n([\d]+)", text).groups() + if weight_search != None: + weight = str(weight_search[0]) + weight = weight.strip() + + address_search=re.search(r"\([\d]+\) [\d]+\-[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text).groups() + addr="" + if address_search != None: + address = str(address_search[0]) + addr1=address.split("\n\n") + tempaddr=addr1[0] + addr=str(tempaddr) + addr.replace("\n"," ") + addr = addr.strip() + + + emr_name=re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text).groups() + if emr_name != None: + ename = str(emr_name[0]) + ename = ename.strip() + + emr_addr=re.search(r"Height:\n[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text).groups() + if emr_addr != None: + emr_add = str(emr_addr[0]) + emr_add1=emr_add.split("\n\n") + tempemr=emr_add1[0] + emr_addr=str(tempemr) + emr_addr.replace("\n"," ") + emr_addr = emr_addr.strip() + + home_phone=re.search(r"Home phone\n(\([\d]+\) [\d]+\-[\d]+)", text).groups() + if home_phone != None: + home = str(home_phone[0]) + home = home.strip() + + work_phone=re.search(r"Work phone\n(\([\d]+\) [\d]+\-[\d]+)", text).groups() + if work_phone != None: + work = str(work_phone[0]) + work = work.strip() + + chicken_search=re.search(r"Chicken Pox \(Varicella\):\n*([a-zA-Z0-9, ]+)", text).groups() + if chicken_search != None: + chicken = str(chicken_search[0]) + chicken = chicken.strip() + + measles_search=re.search(r"Measles:\n\n([a-zA-z0-9, ]+)", text).groups() + if measles_search != None: + meas = str(measles_search[0]) + meas = meas.strip() + + hepa_search=re.search(r"Have you had the Hepatitis B vaccination\?\n\n([a-zA-z0-9, ]+)", text).groups() + if hepa_search != None: + hepa = str(hepa_search[0]) + hepa = hepa.strip() + + med_search=re.search(r"headaches\)\:\n([0-9A-Za-z\n\n\s,.]+)\n\nPage", text).groups() + if med_search != None: + medess = str(med_search[0]) + med=medess.strip() + + + ins_search=re.search(r"Name of Insurance Company:\n*([a-zA-Z0-9, ]+)", text).groups() + if ins_search != None: + insurance = str(ins_search[0]) + insurance = insurance.strip() + + pol_search=re.search(r"Policy Number:\n*([0-9]+)", text).groups() + if pol_search != None: + policyno = str(pol_search[0]) + policyno = policyno.strip() + + exp_search=re.search(r"Expiry Date:\n*([a-zA-Z0-9, ]+)", text).groups() + if pol_search != None: + expdate = str(exp_search[0]) + expdate = expdate.strip() + + hm_search=re.search(r"Do you have medical insurance\?\n*([a-zA-Z0-9, ]+)", text).groups() + if pol_search != None: + havemed = str(hm_search[0]) + havemed = havemed.strip() + + + + + + alrgess_search=re.search(r"List any allergies:\n*([0-9A-Za-z\n\s\,]+)", text).groups() + if alrgess_search != None: + alrgess = str(alrgess_search[0]) + alrg1=alrgess.split("\n\n") + tempalrg=alrg1[0] + alrg=str(tempalrg) + alrg.replace("\n"," ") + alrg=alrg.strip() + + + madicationess_search=re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,.]+)\n\n", text).groups() + if madicationess_search != None: + madicationess = str(madicationess_search[0]) + + madication=madicationess.strip() + + + + +# Date of Birth: 12/10/1948 Age: 70 y.o. + # address_regex = r"Date of Birth:[ ]+[0-9\/]+[ ]*Age:[ ]*[0-7 ]+y.o.[\n]+Address:[ ]+([0-9A-Za-z\n\s]+)" + # address_search = re.search(address_regex, text).groups() + + # if address_search != None: + # address = str(address_search[0]) + + # address = address.strip() + patient ={ + "name": name, + # "gender": gender, + "phone": phone, + "dob": dob, + "height": height, + "weight": weight, + "address": addr, + "Emergency(name)": ename, + "Emergency(Emergency Address)": emr_addr, + "Emergency(home phone)": home, + "Emergency(work phone)": work, + "Chicken Pox (Varicella)" :chicken, + "Measles": meas, + "Have you had the Hepatitis B vaccination?":hepa, + "Medical Problems":med, + "Name of Insuarance Company":insurance, + "Policy Number":policyno, + "Expiry Date":expdate, + "Have medical insurance?":havemed, + "Any Allergies":alrg, + "Any Medications Regularly":madication + + } + + + return patient diff --git a/ocr-api/extractor/format2.py b/ocr-api/extractor/format2.py new file mode 100644 index 0000000..ba305e0 --- /dev/null +++ b/ocr-api/extractor/format2.py @@ -0,0 +1,27 @@ +import re + + +def extract_details_format2(text): + regex = "Preoperative History and Physical Exam([\n\r]*)([0-9/]+)([\n\r])+([a-zA-Z\- ]+)([\n\r]*)([0-9/]+)" + search = re.search(regex, text).groups() + name = search[3] + name = " ".join(name.strip().split(",")[::-1]).strip() + dob = search[-1] + + gender_regex = f"{name} is (a|an) ([0-9]+) y.o. (male|female|Male|Female|M|F|m|f)" + gender_search = re.search(gender_regex, text).groups() + gender = gender_search[2] + if gender.lower()[0] == "m": + gender = "M" + else: + gender = "F" + + patient = [ + { + "name": name, + "gender": gender, + # "phone": phone, + "dob": dob, + # "address": address + }] + return patient diff --git a/ocr-api/extractor/format3.py b/ocr-api/extractor/format3.py new file mode 100644 index 0000000..53c3183 --- /dev/null +++ b/ocr-api/extractor/format3.py @@ -0,0 +1,54 @@ +import re + + +def extract_details_format3(text): + name_regex = r"Name:[ ]*([a-zA-Z, -]+)" + name_search = re.search(name_regex, text).groups() + + if name_search != None: + name = str(name_search[0]) + + name = " ".join(name.strip().split(",")[::-1]).strip() + +# gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" +# gender_search = re.search(gender_regex, text).groups() + +# if gender_search != None: +# gender = str(gender_search[0]) + +# gender = gender.strip() + +# phone_regex = r"Phone:[ ]+([0-9\-]+)" +# phone_search = re.search(phone_regex, text).groups() + +# if phone_search != None: +# phone = str(phone_search[0]) + +# phone = phone.strip() + + dob_regex = r"DOB:[ ]*([0-9\/]+)" + dob_search = re.search(dob_regex, text).groups() + + if dob_search != None: + dob = str(dob_search[0]) + + dob = dob.strip() + + gender_regex = f"{name} is (a|an) ([0-9]+) (year old|y.o.) (male|female|Male|Female|M|F|m|f)" + gender_search = re.search(gender_regex, text).groups() + gender = gender_search[-1] + if gender.lower()[0] == "m": + gender = "M" + else: + gender = "F" + + patient = [ + { + "name": name, + "gender": gender, + # "phone": phone, + "dob": dob, + # "address": address + } + ] + return patient diff --git a/ocr-api/extractor/format4.py b/ocr-api/extractor/format4.py new file mode 100644 index 0000000..428717b --- /dev/null +++ b/ocr-api/extractor/format4.py @@ -0,0 +1,64 @@ +import re + + +def extract_details_format4(text): + name_regex = r"Patient:[ ]*([a-zA-Z, -]+)[ ]*DOB" + name_search = re.search(name_regex, text).groups() + + if name_search != None: + name = str(name_search[0]) + + name = " ".join(name.strip().split(",")[::-1]).strip() + + dob_regex = r"DOB:[ ]*([0-9\/]+)[ ]*Visit" + dob_search = re.search(dob_regex, text).groups() + + if dob_search != None: + dob = str(dob_search[0]) + + dob = dob.strip() + + gender_regex = f"(sex|gender|SEX|Sex|Gender|GENDER):[ ]*(male|female|Male|Female|M|F|m|f)" + gender_search = re.search(gender_regex, text).groups() + gender = gender_search[-1] + if gender.lower()[0] == "m": + gender = "M" + else: + gender = "F" + + address_regex = r"Address:[ ]*([0-9A-Za-z\n\s\- ,]+) Pref." + address_search = re.search(address_regex, text).groups() + + if address_search != None: + address = str(address_search[0]) + + address = address.strip() + + phone_regex = "Pref.[ ]*Phone\([A-Za-z]+\):[ ]*([0-9\-]*)" + phone_search = re.search(phone_regex, text).groups() + if phone_search != None: + print(phone_search) + phone = str(phone_search[-1]) + + phone = phone.strip() + + referred_by_regex = r"Referred[ ]*By:[ ]*([a-zA-Z, -]+)" + referred_by_search = re.search(referred_by_regex, text).groups() + + if referred_by_search != None: + referred_by = str(referred_by_search[0]) + + referred_by = " ".join(referred_by.strip().split(",")[::-1]).strip() + + patient = [ + { + "name": name, + "gender": gender, + "phone": phone, + "dob": dob, + "address": address, + "referred_by": referred_by + } + ] + + return patient diff --git a/ocr-api/nginx.conf b/ocr-api/nginx.conf new file mode 100644 index 0000000..69bd385 --- /dev/null +++ b/ocr-api/nginx.conf @@ -0,0 +1,28 @@ +server { + listen 80; + server_name localhost; + + #charset koi8-r; + #access_log /var/log/nginx/host.access.log main; + + location / { + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header X-Forwarded-Host $server_name; + proxy_pass http://ocr-api:5001; + } + + #error_page 404 /404.html; + + # redirect server error pages to the static page /50x.html + # + error_page 500 502 503 504 /50x.html; + location = /50x.html { + root /usr/share/nginx/html; + } + + client_max_body_size 20M; + proxy_connect_timeout 300s; + proxy_read_timeout 300s; +} diff --git a/ocr-api/parser/__pycache__/__init__.cpython-36.pyc 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zk6g&GCyFdABe{Q$SGo>uOs;bQ)-J&M1=zR%n=#Q%O$NLi@?brIRow?8QH@UVfSj}? zuJID833%3PlrP#ylJ|jF#Yj(v2G(1YlQ&RNTRj47;hnCfygrwq1h$mlJIrI56nUlm z?W35N8h34oCn*o}DC2a>!13LcZB8|ysf6e98xk{co%5xYQWOU~mMdi>DlR75a(S#A z6Y1!iH^Ct6VS?Lu8V6X+f*)fYoeV8U2bO8{6#(5R!>43``)EKI8CW&mLhn`ww#1SQ zt=b-8Xx*uuq0KC2j|gBg1YgUiwixLE1s@ieGjwY*GL=AryOaEe@1E&zpOCwOLJ9}n zhG>AVtV#+sRUS)TK`S69I+J8kpNFytA(iBP)eyW)qnIl70aBSMz^}*bRRn37xK$H#B1In6!^)waT zTZ$AF-1fK<3s6UAC+aW6@ Date: Mon, 21 Dec 2020 16:22:32 +0530 Subject: [PATCH 05/33] "finalized ocr"# finalized --- medical-ocr-poc/.babelrc | 12 + medical-ocr-poc/.editorconfig | 9 + medical-ocr-poc/.gitignore | 14 + medical-ocr-poc/.postcssrc.js | 10 + medical-ocr-poc/deploy | 0 medical-ocr-poc/dummy.txt | 1 - medical-ocr-poc/src/components/Main.vue | 17 +- medical-ocr-poc/static/.gitkeep | 0 ocr-api-demo/.dockerignore | 5 + ocr-api-demo/.gitignore | 19 ++ {ocr-api => ocr-api-demo}/Dockerfile | 0 {ocr-api => ocr-api-demo}/app.py | 9 +- {ocr-api => ocr-api-demo}/default | 0 .../docker-compose.yml.example | 0 ocr-api-demo/extractor/__init__.py | 0 ocr-api-demo/extractor/extract.py | 67 +++++ ocr-api-demo/extractor/format1.py | 267 ++++++++++++++++++ .../extractor/format2.py | 0 .../extractor/format3.py | 0 .../extractor/format4.py | 0 ocr-api-demo/image_utils/image_to_string.py | 40 +++ ocr-api-demo/image_utils/segment.py | 35 +++ {ocr-api => ocr-api-demo}/nginx.conf | 0 ocr-api-demo/parser/__init__.py | 0 ocr-api-demo/parser/parser.py | 29 ++ {ocr-api => ocr-api-demo}/requirements.txt | 0 ocr-api-demo/uploads/demo | 0 {ocr-api => ocr-api-demo}/wsgi.py | 0 ocr-api/__pycache__/app.cpython-36.pyc | Bin 2070 -> 0 bytes ocr-api/__pycache__/app.cpython-38.pyc | Bin 1952 -> 0 bytes ocr-api/__pycache__/wsgi.cpython-36.pyc | Bin 170 -> 0 bytes ocr-api/__pycache__/wsgi.cpython-38.pyc | Bin 178 -> 0 bytes ocr-api/docker-compose.yml | 18 -- ocr-api/dummy.txt | 1 - .../__pycache__/__init__.cpython-36.pyc | Bin 113 -> 0 bytes .../__pycache__/__init__.cpython-38.pyc | 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insertions(+), 248 deletions(-) create mode 100644 medical-ocr-poc/.babelrc create mode 100644 medical-ocr-poc/.editorconfig create mode 100644 medical-ocr-poc/.gitignore create mode 100644 medical-ocr-poc/.postcssrc.js mode change 100644 => 100755 medical-ocr-poc/deploy delete mode 100644 medical-ocr-poc/dummy.txt create mode 100644 medical-ocr-poc/static/.gitkeep create mode 100644 ocr-api-demo/.dockerignore create mode 100644 ocr-api-demo/.gitignore rename {ocr-api => ocr-api-demo}/Dockerfile (100%) rename {ocr-api => ocr-api-demo}/app.py (85%) rename {ocr-api => ocr-api-demo}/default (100%) rename {ocr-api => ocr-api-demo}/docker-compose.yml.example (100%) create mode 100644 ocr-api-demo/extractor/__init__.py create mode 100644 ocr-api-demo/extractor/extract.py create mode 100644 ocr-api-demo/extractor/format1.py rename {ocr-api => ocr-api-demo}/extractor/format2.py (100%) rename {ocr-api => ocr-api-demo}/extractor/format3.py (100%) rename {ocr-api => ocr-api-demo}/extractor/format4.py (100%) create mode 100644 ocr-api-demo/image_utils/image_to_string.py create mode 100644 ocr-api-demo/image_utils/segment.py rename {ocr-api => ocr-api-demo}/nginx.conf (100%) create mode 100644 ocr-api-demo/parser/__init__.py create mode 100644 ocr-api-demo/parser/parser.py rename {ocr-api => ocr-api-demo}/requirements.txt (100%) create mode 100644 ocr-api-demo/uploads/demo rename {ocr-api => ocr-api-demo}/wsgi.py (100%) delete mode 100644 ocr-api/__pycache__/app.cpython-36.pyc delete mode 100644 ocr-api/__pycache__/app.cpython-38.pyc delete mode 100644 ocr-api/__pycache__/wsgi.cpython-36.pyc delete mode 100644 ocr-api/__pycache__/wsgi.cpython-38.pyc delete mode 100644 ocr-api/docker-compose.yml delete mode 100644 ocr-api/dummy.txt delete mode 100644 ocr-api/extractor/__pycache__/__init__.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/__init__.cpython-38.pyc delete mode 100644 ocr-api/extractor/__pycache__/format1.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/format1.cpython-38.pyc delete mode 100644 ocr-api/extractor/__pycache__/format2.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/format2.cpython-38.pyc delete mode 100644 ocr-api/extractor/__pycache__/format3.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/format3.cpython-38.pyc delete mode 100644 ocr-api/extractor/__pycache__/format4.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/format4.cpython-38.pyc delete mode 100644 ocr-api/extractor/__pycache__/format5.cpython-36.pyc delete mode 100644 ocr-api/extractor/__pycache__/format5.cpython-38.pyc delete mode 100644 ocr-api/extractor/format1.py delete mode 100644 ocr-api/parser/__pycache__/__init__.cpython-36.pyc delete mode 100644 ocr-api/parser/__pycache__/__init__.cpython-38.pyc delete mode 100644 ocr-api/parser/__pycache__/parser.cpython-36.pyc delete mode 100644 ocr-api/parser/__pycache__/parser.cpython-38.pyc delete mode 100644 ocr-api/parser/parser.py diff --git a/medical-ocr-poc/.babelrc b/medical-ocr-poc/.babelrc new file mode 100644 index 0000000..3a280ba --- /dev/null +++ b/medical-ocr-poc/.babelrc @@ -0,0 +1,12 @@ +{ + "presets": [ + ["env", { + "modules": false, + "targets": { + "browsers": ["> 1%", "last 2 versions", "not ie <= 8"] + } + }], + "stage-2" + ], + "plugins": ["transform-vue-jsx", "transform-runtime"] +} diff --git a/medical-ocr-poc/.editorconfig b/medical-ocr-poc/.editorconfig new file mode 100644 index 0000000..9d08a1a --- /dev/null +++ b/medical-ocr-poc/.editorconfig @@ -0,0 +1,9 @@ +root = true + +[*] +charset = utf-8 +indent_style = space +indent_size = 2 +end_of_line = lf +insert_final_newline = true +trim_trailing_whitespace = true diff --git a/medical-ocr-poc/.gitignore b/medical-ocr-poc/.gitignore new file mode 100644 index 0000000..541a820 --- /dev/null +++ b/medical-ocr-poc/.gitignore @@ -0,0 +1,14 @@ +.DS_Store +node_modules/ +/dist/ +npm-debug.log* +yarn-debug.log* +yarn-error.log* + +# Editor directories and files +.idea +.vscode +*.suo +*.ntvs* +*.njsproj +*.sln diff --git a/medical-ocr-poc/.postcssrc.js b/medical-ocr-poc/.postcssrc.js new file mode 100644 index 0000000..eee3e92 --- /dev/null +++ b/medical-ocr-poc/.postcssrc.js @@ -0,0 +1,10 @@ +// https://github.com/michael-ciniawsky/postcss-load-config + +module.exports = { + "plugins": { + "postcss-import": {}, + "postcss-url": {}, + // to edit target browsers: use "browserslist" field in package.json + "autoprefixer": {} + } +} diff --git a/medical-ocr-poc/deploy b/medical-ocr-poc/deploy old mode 100644 new mode 100755 diff --git a/medical-ocr-poc/dummy.txt b/medical-ocr-poc/dummy.txt deleted file mode 100644 index 8b13789..0000000 --- a/medical-ocr-poc/dummy.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/medical-ocr-poc/src/components/Main.vue b/medical-ocr-poc/src/components/Main.vue index 9277bdb..4f59fbb 100644 --- a/medical-ocr-poc/src/components/Main.vue +++ b/medical-ocr-poc/src/components/Main.vue @@ -2,7 +2,7 @@
-

Step 1: Upload

+

Step 1: Upload

Upload to server -

Result

- +

Patient Information

+
-
- - + +
+ + +

+

Emergency Information

+ +

General Medical History

diff --git a/medical-ocr-poc/static/.gitkeep b/medical-ocr-poc/static/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/ocr-api-demo/.dockerignore b/ocr-api-demo/.dockerignore new file mode 100644 index 0000000..0ee3373 --- /dev/null +++ b/ocr-api-demo/.dockerignore @@ -0,0 +1,5 @@ +development.yml +Dockerfile +production.yml +docker-compose.yml +docker-compose.yml.example \ No newline at end of file diff --git a/ocr-api-demo/.gitignore b/ocr-api-demo/.gitignore new file mode 100644 index 0000000..2355740 --- /dev/null +++ b/ocr-api-demo/.gitignore @@ -0,0 +1,19 @@ +is_running +docker-compose.yml +.idea +*.xlsm +*.xlsx +__pycache__ +logs +*.log +.vscode +.vscode/* +*.xls +.cache/ +docker_data +Backup_Reports +docker_datagit +Backup_Reports +XDG_CACHE_HOME +*.log.* +*.pdf \ No newline at end of file diff --git a/ocr-api/Dockerfile b/ocr-api-demo/Dockerfile similarity index 100% rename from ocr-api/Dockerfile rename to ocr-api-demo/Dockerfile diff --git a/ocr-api/app.py b/ocr-api-demo/app.py similarity index 85% rename from ocr-api/app.py rename to ocr-api-demo/app.py index 9bcba1b..0074519 100644 --- a/ocr-api/app.py +++ b/ocr-api-demo/app.py @@ -2,10 +2,10 @@ import sys import random import string +import logging from flask import Flask, request, json from parser.parser import parse from flask_cors import CORS -import logging ROOT_DIR = os.path.dirname(__file__) PARENT_DIR = os.path.dirname(__file__) + '/' + str(os.pardir) sys.path.append(PARENT_DIR) @@ -46,10 +46,15 @@ def extract_fields(): file_path = app.config['UPLOAD_FOLDER'] + "/"\ + get_random_string(32) + ".pdf" file.save(file_path) - text, patient = parse(file_path, format) + text, patient, error = parse(file_path, format) app.logger.info("-------------------------------------------------------") app.logger.info(patient) + app.logger.info("-------------------------------------------------------") + app.logger.info(error) + app.logger.info("-------------------------------------------------------") + app.logger.info(text) + app.logger.info("-------------------------------------------------------") response = app.response_class( response=json.dumps({ "text": text, diff --git a/ocr-api/default b/ocr-api-demo/default similarity index 100% rename from ocr-api/default rename to ocr-api-demo/default diff --git a/ocr-api/docker-compose.yml.example b/ocr-api-demo/docker-compose.yml.example similarity index 100% rename from ocr-api/docker-compose.yml.example rename to ocr-api-demo/docker-compose.yml.example diff --git a/ocr-api-demo/extractor/__init__.py b/ocr-api-demo/extractor/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/ocr-api-demo/extractor/extract.py b/ocr-api-demo/extractor/extract.py new file mode 100644 index 0000000..de861c8 --- /dev/null +++ b/ocr-api-demo/extractor/extract.py @@ -0,0 +1,67 @@ +import cv2 +from flask import current_app as app +from extractor import format2 +from extractor import format3 +from extractor import format4 +from extractor import format1 +from image_utils.image_to_string import from_image_to_string +from image_utils.image_to_string import from_lines_to_string +import logging +import numpy as np + +functions = { + 'format1': format1, + 'format2': format2, + 'format3': format3, + 'format4': format4 +} + + +def clarify_text(img): + img2 = img.copy().astype('uint8') + disp_img = cv2.cvtColor(img2,cv2.COLOR_BGR2GRAY).astype('uint8') +# blur = cv2.GaussianBlur(disp_img,(3,3),0).astype('uint8') + ret3,th3 = cv2.threshold(disp_img, 0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU) + disp_img = cv2.medianBlur(th3, 3) + disp_img = cv2.resize(disp_img,None,fx=5, fy=5, interpolation = cv2.INTER_CUBIC) + kernel = np.ones((3,3),np.uint8) + dilated = cv2.dilate(th3,kernel,iterations = 1) + eroded = cv2.erode(dilated,kernel,iterations = 1) + dilated = cv2.dilate(eroded,kernel,iterations = 1) + eroded = cv2.erode(dilated,kernel,iterations = 1) + return eroded +def get_information(img_list, file_format): + """ + extracts information from images + returns dict containing information + """ + #first pass + app.logger.info("milestone") + + for i in range(len(img_list)): + + gray = cv2.cvtColor(np.array(img_list[i]), cv2.COLOR_BGR2GRAY) + img = cv2.resize(gray, None, fx=0.5, fy=0.5, interpolation=cv2.INTER_AREA) + img = cv2.resize(img, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) + img_list[i] = cv2.threshold(img, 127, 255, cv2.THRESH_BINARY)[1] + + + text = from_image_to_string(img_list) + app.logger.info(text) + patient = functions[file_format].extract_details(text) + + #check for missing values in patient + + # empty_values = [] + # for k, v in patient.items(): + # if v == '': + # empty_values.append(k) + + # if empty_values: + # text_2 = from_lines_to_string(img_list) + # for key in empty_values: + # patient[key] = functions[file_format].extract_details(text_2, key) + + #returned well formated patient information + # patient = functions[file_format].map_to_format(patient) + return text, patient \ No newline at end of file diff --git a/ocr-api-demo/extractor/format1.py b/ocr-api-demo/extractor/format1.py new file mode 100644 index 0000000..03ca2c7 --- /dev/null +++ b/ocr-api-demo/extractor/format1.py @@ -0,0 +1,267 @@ +import re + + +def extract_details(text): + name_regex = r"Patient Information\n*([a-zA-Z0-9, ]+)" + name_search = re.search(name_regex, text) + + if name_search != None: + name_search=name_search.groups() + name = str(name_search[0]) + + name = " ".join(name.strip().split(",")[::-1]).strip() + else: + name="" + # gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" + # gender_search = re.search(gender_regex, text).groups() + + # if gender_search != None: + # gender = str(gender_search[0]) + + # gender = gender.strip() + phone_search = re.search(r"(\([\d]+\) [\d]+\-[\d]+)", text) + + if phone_search != None: + phone_search=phone_search.groups() + phone_search = str(phone_search[0]) + phone = phone_search.strip() + else: + phone="" + + + dob_regex = r"Birth Date\n*([A-Za-z0-9, ]+)" + dob_search = re.search(dob_regex, text) + + if dob_search != None: + dob_search=dob_search.groups() + dob = str(dob_search[0]) + dob = dob.strip() + else: + dob="" + + height_search=re.search(r"Height:\n*([\d]+)", text) + if height_search != None: + height_search=height_search.groups() + height = str(height_search[0]) + height = height.strip() + else: + height="" + + weight_search=re.search(r"Weight:\n*([\d]+)", text) + if weight_search != None: + weight_search=weight_search.groups() + weight = str(weight_search[0]) + weight = weight.strip() + else: + weight="" + + address_search=re.search(r"\([\d]+\) [\d]+\-[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) + addr="" + if address_search != None: + address_search=address_search.groups() + address = str(address_search[0]) + addr1=address.split("\n\n") + tempaddr=addr1[0] + addr=str(tempaddr) + ' '.join(addr.splitlines()) + addr = addr.strip() + else: + addr="" + + + emr_name=re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text) + if emr_name != None: + emr_name=emr_name.groups() + ename = str(emr_name[0]) + ename = ename.strip() + else: + ename="" + + emr_addr=re.search(r"Height:\n*[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) + if emr_addr != None: + emr_addr=emr_addr.groups() + emr_add = str(emr_addr[0]) + emr_add1=emr_add.split("\n\n") + tempemr=emr_add1[0] + emr_addr=str(tempemr) + emr_addr.replace("\n"," ") + emr_addr = emr_addr.strip() + else: + emr_addr="" + + home_phone=re.search(r"Home phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) + if home_phone != None: + home_phone=home_phone.groups() + home = str(home_phone[0]) + home = home.strip() + else: + home="" + + work_phone=re.search(r"Work phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) + if work_phone != None: + work_phone=work_phone.groups() + work = str(work_phone[0]) + work = work.strip() + else: + work="" + + chicken_search=re.search(r"Chicken Pox \(Varicella\):\n*([a-zA-Z0-9, \/]+)", text) + if chicken_search != None: + chicken_search=chicken_search.groups() + chicken = str(chicken_search[0]) + chicken = chicken.strip() + else: + chicken="" + + measles_search=re.search(r"Measles:\n\n([a-zA-z0-9, \/]+)", text) + if measles_search != None: + measles_search=measles_search.groups() + meas = str(measles_search[0]) + meas = meas.strip() + else: + meas="" + + hepa_search=re.search(r"Have you had the Hepatitis B vaccination\?\n\n([a-zA-z0-9, ]+)", text) + if hepa_search != None: + hepa_search=hepa_search.groups() + hepa = str(hepa_search[0]) + hepa = hepa.strip() + else: + hepa="" + + med_search=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Page*", text) + med_search1=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Create*", text) + med_search2=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*€}", text) + med_search3=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Name", text) + + if med_search != None: + med_search=med_search.groups() + medess = str(med_search[0]) + med=medess.strip() + elif med_search1 != None: + med_search1=med_search1.groups() + medess = str(med_search1[0]) + med=medess.strip() + elif med_search2 != None: + med_search2=med_search2.groups() + med2 = str(med_search2[0]) + med=med2.strip() + elif med_search3 != None: + med_search3=med_search3.groups() + med2 = str(med_search3[0]) + med=med2.strip() + else: + med="" + + + ins_search=re.search(r"Name of Insurance Company:\n*([a-zA-Z, ]+)", text) + if ins_search != None: + ins_search=ins_search.groups() + insurance = str(ins_search[0]) + insurance = insurance.strip() + else: + insurance="" + + pol_search=re.search(r"Policy Number:\n*[a-zA-Z\s, ]*([0-9]+)", text) + if pol_search != None: + pol_search=pol_search.groups() + policyno = str(pol_search[0]) + policyno = policyno.strip() + else: + policyno="" + + exp_search=re.search(r"Expiry Date:\n*([a-zA-Z0-9, ]+)", text) + if exp_search != None: + exp_search=exp_search.groups() + expdate = str(exp_search[0]) + expdate = expdate.strip() + else: + expdate="" + + hm_search=re.search(r"Do you have medical insurance\?\n*([a-zA-Z0-9, \/]+)", text) + if hm_search != None: + hm_search=hm_search.groups() + havemed = str(hm_search[0]) + havemed = havemed.strip() + else: + havemed="" + + + + + + alrgess_search=re.search(r"List any allergies:\n*([0-9A-Za-z\n\s,.\/]+)\n\n", text) + if alrgess_search != None: + alrgess_search=alrgess_search.groups() + alrgess = str(alrgess_search[0]) + alrg1=alrgess.split("\n\n") + tempalrg=alrg1[0] + alrg=str(tempalrg) + alrg.replace("\n"," ") + alrg=alrg.strip() + else: + alrg="" + + + madicationess_search=re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) + mad=re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) + mad2= re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*€}", text) + mad3= re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*", text) + + + if mad != None: + mad=mad.groups() + mad=str(mad[0]) + madication=mad.strip() + elif madicationess_search != None: + madicationess_search=madicationess_search.groups() + madicationess = str(madicationess_search[0]) + madication=madicationess.strip() + elif mad2 != None: + mad2=mad2.groups() + mad2 = str(mad2[0]) + madication=mad2.strip() + elif mad3 !=None: + mad3=mad3.groups() + mad2 = str(mad3[0]) + madication=mad2.strip() + else: + madication="" + + + + +# Date of Birth: 12/10/1948 Age: 70 y.o. + # address_regex = r"Date of Birth:[ ]+[0-9\/]+[ ]*Age:[ ]*[0-7 ]+y.o.[\n]+Address:[ ]+([0-9A-Za-z\n\s]+)" + # address_search = re.search(address_regex, text).groups() + + # if address_search != None: + # address = str(address_search[0]) + + # address = address.strip() + patient =[ + ("name", name), + # "gender"), gender), + ("phone", phone), + ("dob", dob), + ("height", height), + ("weight", weight), + ("address", addr), + ("Name", ename), + ("Address", emr_addr), + ("home phone", home_phone), + ("work phone", work), + ("Chicken Pox (Varicella)" ,chicken), + ("Measles", meas), + ("Have you had the Hepatitis B vaccination?",hepa), + ("Medical Problems",med), + ("Name of Insuarance Company",insurance), + ("Policy Number",policyno), + ("Expiry Date",expdate), + ("Have medical insurance?",havemed), + ("Any Allergies",alrg), + ("Any Medications Regularly",madication) + ] + + + return patient diff --git a/ocr-api/extractor/format2.py b/ocr-api-demo/extractor/format2.py similarity index 100% rename from ocr-api/extractor/format2.py rename to ocr-api-demo/extractor/format2.py diff --git a/ocr-api/extractor/format3.py b/ocr-api-demo/extractor/format3.py similarity index 100% rename from ocr-api/extractor/format3.py rename to ocr-api-demo/extractor/format3.py diff --git a/ocr-api/extractor/format4.py b/ocr-api-demo/extractor/format4.py similarity index 100% rename from ocr-api/extractor/format4.py rename to ocr-api-demo/extractor/format4.py diff --git a/ocr-api-demo/image_utils/image_to_string.py b/ocr-api-demo/image_utils/image_to_string.py new file mode 100644 index 0000000..05faeb1 --- /dev/null +++ b/ocr-api-demo/image_utils/image_to_string.py @@ -0,0 +1,40 @@ +import pytesseract +from image_utils.segment import get_lines + +# not working +config_str = ( + r'-c tessedit_char_whitelist=" 0123456789' + r'abcdefghijklmnopqrstuvwxyz' + r'ABCDEFGHIJKLMNOPQRSTUVWXYZ' + r':.,/|()-" ' + r'-c preserve_interword_spaces=1 ' + ) + + +def from_image_to_string(img_list): + """ + extracts text from the list of images + applies tesseract on entire image without any preprocessing + """ + text_list = [] + for img in img_list: + text = str(pytesseract.image_to_string(img, lang='eng')) + text = text.replace('-\n', '') + text_list.append(text) + text = "\n".join(text_list) + return text + + +def from_lines_to_string(img_list): + """ + converts the list of images into lines and extracts text from lines + """ + text_list = [] + for img in img_list: + lines = get_lines(img) + for line in lines: + text = str(pytesseract.image_to_string(line, lang='eng')) + text = text.replace('-\n', '') + text_list.append(text) + text = "\n".join(text_list) + return text diff --git a/ocr-api-demo/image_utils/segment.py b/ocr-api-demo/image_utils/segment.py new file mode 100644 index 0000000..b59a376 --- /dev/null +++ b/ocr-api-demo/image_utils/segment.py @@ -0,0 +1,35 @@ +from cv2 import cv2 +import numpy as np +def get_lines(img): + """ + returns a list of numpy ndarrays containing line segments extracted from the image + """ + lines = [] + + + #pre-processing image + img = cv2.cvtColor(np.array(img), cv2.COLOR_RGB2BGR) + gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) + th, threshed = cv2.threshold(gray, 127, 255, cv2.THRESH_BINARY_INV|cv2.THRESH_OTSU) + + #finding lines + hist = cv2.reduce(threshed,1, cv2.REDUCE_AVG).reshape(-1) + th = 1 + H = img.shape[0] + uppers = [y for y in range(H-1) if hist[y]<=th and hist[y+1]>th] + lowers = [y for y in range(H-1) if hist[y]>th and hist[y+1]<=th] + + #storing image line by line in a list + threshed = cv2.bitwise_not(threshed) + min_height = 40 + max_height = 100 + for s,e in zip(uppers[:-1], lowers[1:]): + if e-s > min_height and e-s < max_height: + temp_img = cv2.copyMakeBorder((threshed[s-5:e+5]), 50, 50, 0, 0,\ + cv2.BORDER_CONSTANT, None,\ + (255, 255, 255)) + lines.append(temp_img) + + + + return lines diff --git a/ocr-api/nginx.conf b/ocr-api-demo/nginx.conf similarity index 100% rename from ocr-api/nginx.conf rename to ocr-api-demo/nginx.conf diff --git a/ocr-api-demo/parser/__init__.py b/ocr-api-demo/parser/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/ocr-api-demo/parser/parser.py b/ocr-api-demo/parser/parser.py new file mode 100644 index 0000000..19adede --- /dev/null +++ b/ocr-api-demo/parser/parser.py @@ -0,0 +1,29 @@ +import os +import sys +import logging +from pdf2image import convert_from_path +from extractor.extract import get_information + +ROOT_DIR = os.path.dirname(__file__) +PARENT_DIR = os.path.dirname(__file__) + '/' + str(os.pardir) +sys.path.append(PARENT_DIR) +logging.basicConfig(level=logging.DEBUG) + +def parse(file_name, file_format): + """ + coverts pdf to a list of image + returns text and a dict containing information + """ + pages = convert_from_path(file_name, 500) + + text="" + # app.logger.info("sfd"); + error = None + try: + # app.logger.info("------") + text, patient = get_information(pages, file_format) + except Exception as e: + patient = None + error = e + return text, patient, error + diff --git a/ocr-api/requirements.txt b/ocr-api-demo/requirements.txt similarity index 100% rename from ocr-api/requirements.txt rename to ocr-api-demo/requirements.txt diff --git a/ocr-api-demo/uploads/demo b/ocr-api-demo/uploads/demo new file mode 100644 index 0000000..e69de29 diff --git a/ocr-api/wsgi.py b/ocr-api-demo/wsgi.py similarity index 100% rename from ocr-api/wsgi.py rename to ocr-api-demo/wsgi.py diff 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C>aWuP diff --git a/ocr-api/extractor/format1.py b/ocr-api/extractor/format1.py deleted file mode 100644 index 4f867b7..0000000 --- a/ocr-api/extractor/format1.py +++ /dev/null @@ -1,179 +0,0 @@ -import re - - -def extract_details_format1(text): - name_regex = r"Patient Information\n([a-zA-Z0-9, ]+)" - name_search = re.search(name_regex, text).groups() - - if name_search != None: - name = str(name_search[0]) - - name = " ".join(name.strip().split(",")[::-1]).strip() - # gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" - # gender_search = re.search(gender_regex, text).groups() - - # if gender_search != None: - # gender = str(gender_search[0]) - - # gender = gender.strip() - phone_search = re.search(r"(\([\d]+\) [\d]+\-[\d]+)", text).groups() - print(phone_search) - if phone_search != None: - phone = str(phone_search[0]) - - - phone = phone.strip() - - - dob_regex = r"Birth Date\n([A-Za-z0-9, ]+)" - dob_search = re.search(dob_regex, text).groups() - - if dob_search != None: - dob = str(dob_search[0]) - - dob = dob.strip() - - height_search=re.search(r"Height:\n([\d]+)", text).groups() - if height_search != None: - height = str(height_search[0]) - height = height.strip() - - weight_search=re.search(r"Weight:\n([\d]+)", text).groups() - if weight_search != None: - weight = str(weight_search[0]) - weight = weight.strip() - - address_search=re.search(r"\([\d]+\) [\d]+\-[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text).groups() - addr="" - if address_search != None: - address = str(address_search[0]) - addr1=address.split("\n\n") - tempaddr=addr1[0] - addr=str(tempaddr) - addr.replace("\n"," ") - addr = addr.strip() - - - emr_name=re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text).groups() - if emr_name != None: - ename = str(emr_name[0]) - ename = ename.strip() - - emr_addr=re.search(r"Height:\n[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text).groups() - if emr_addr != None: - emr_add = str(emr_addr[0]) - emr_add1=emr_add.split("\n\n") - tempemr=emr_add1[0] - emr_addr=str(tempemr) - emr_addr.replace("\n"," ") - emr_addr = emr_addr.strip() - - home_phone=re.search(r"Home phone\n(\([\d]+\) [\d]+\-[\d]+)", text).groups() - if home_phone != None: - home = str(home_phone[0]) - home = home.strip() - - work_phone=re.search(r"Work phone\n(\([\d]+\) [\d]+\-[\d]+)", text).groups() - if work_phone != None: - work = str(work_phone[0]) - work = work.strip() - - chicken_search=re.search(r"Chicken Pox \(Varicella\):\n*([a-zA-Z0-9, ]+)", text).groups() - if chicken_search != None: - chicken = str(chicken_search[0]) - chicken = chicken.strip() - - measles_search=re.search(r"Measles:\n\n([a-zA-z0-9, ]+)", text).groups() - if measles_search != None: - meas = str(measles_search[0]) - meas = meas.strip() - - hepa_search=re.search(r"Have you had the Hepatitis B vaccination\?\n\n([a-zA-z0-9, ]+)", text).groups() - if hepa_search != None: - hepa = str(hepa_search[0]) - hepa = hepa.strip() - - med_search=re.search(r"headaches\)\:\n([0-9A-Za-z\n\n\s,.]+)\n\nPage", text).groups() - if med_search != None: - medess = str(med_search[0]) - med=medess.strip() - - - ins_search=re.search(r"Name of Insurance Company:\n*([a-zA-Z0-9, ]+)", text).groups() - if ins_search != None: - insurance = str(ins_search[0]) - insurance = insurance.strip() - - pol_search=re.search(r"Policy Number:\n*([0-9]+)", text).groups() - if pol_search != None: - policyno = str(pol_search[0]) - policyno = policyno.strip() - - exp_search=re.search(r"Expiry Date:\n*([a-zA-Z0-9, ]+)", text).groups() - if pol_search != None: - expdate = str(exp_search[0]) - expdate = expdate.strip() - - hm_search=re.search(r"Do you have medical insurance\?\n*([a-zA-Z0-9, ]+)", text).groups() - if pol_search != None: - havemed = str(hm_search[0]) - havemed = havemed.strip() - - - - - - alrgess_search=re.search(r"List any allergies:\n*([0-9A-Za-z\n\s\,]+)", text).groups() - if alrgess_search != None: - alrgess = str(alrgess_search[0]) - alrg1=alrgess.split("\n\n") - tempalrg=alrg1[0] - alrg=str(tempalrg) - alrg.replace("\n"," ") - alrg=alrg.strip() - - - madicationess_search=re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,.]+)\n\n", text).groups() - if madicationess_search != None: - madicationess = str(madicationess_search[0]) - - madication=madicationess.strip() - - - - -# Date of Birth: 12/10/1948 Age: 70 y.o. - # address_regex = r"Date of Birth:[ ]+[0-9\/]+[ ]*Age:[ ]*[0-7 ]+y.o.[\n]+Address:[ ]+([0-9A-Za-z\n\s]+)" - # address_search = re.search(address_regex, text).groups() - - # if address_search != None: - # address = str(address_search[0]) - - # address = address.strip() - patient ={ - "name": name, - # "gender": gender, - "phone": phone, - "dob": dob, - "height": height, - "weight": weight, - "address": addr, - "Emergency(name)": ename, - "Emergency(Emergency Address)": emr_addr, - "Emergency(home phone)": home, - "Emergency(work phone)": work, - "Chicken Pox (Varicella)" :chicken, - "Measles": meas, - "Have you had the Hepatitis B vaccination?":hepa, - "Medical Problems":med, - "Name of Insuarance Company":insurance, - "Policy Number":policyno, - "Expiry Date":expdate, - "Have medical insurance?":havemed, - "Any Allergies":alrg, - "Any Medications Regularly":madication - - } - - - return patient diff --git a/ocr-api/parser/__pycache__/__init__.cpython-36.pyc b/ocr-api/parser/__pycache__/__init__.cpython-36.pyc deleted file mode 100644 index c0d684c318371b59cfa4f36910e6428c237d1373..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 110 zcmXr!<>h)X{dznD5IhDEFu(|8H~?`m3y?@*2xib^^jpbL1QJFNzohjGit@8klS}jq l5{rsci}d5;GxIV_;^XxSDsOSvg`kf(O&D$Ajp{AOaaM0yz#qT+9L_QW%06G#UL?G8BP?5yUTP{eq(WtkmQZ n{er}z;?yGj`1s7c%#!$cy@JYH95%W6DWy57b|6ikftUdRf3z4j diff --git a/ocr-api/parser/__pycache__/parser.cpython-36.pyc b/ocr-api/parser/__pycache__/parser.cpython-36.pyc deleted file mode 100644 index 99839e2d32fdffba8e4af6a41ea7e61505e99e94..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 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zcmZ`(O-~dt7;ZZsJ2ULUqQHVDPbPa1kdKQoMk5@&fWhx3W-^&}m%;h6Qw)&V6JGrX z9(Lo&Kj2@{^y-PbC%pK!yF?PCP2WE6M|b)@eX=iGtpLIJ{Pjop(?;l*b}kPWoJX*# z?_d~WI7M{4V~UMWD1n`%R%TNh>ztK3nM+-R?X;13)HB#g{Vbq?!EQR0HEGk}M%v1z z=`=fKX-~dh|Y5iRSSH6gyDqEUGDLKH<|y%p&b^msZWS5 zvL({3?u1{@3YBnzN zk6g&GCyFdABe{Q$SGo>uOs;bQ)-J&M1=zR%n=#Q%O$NLi@?brIRow?8QH@UVfSj}? zuJID833%3PlrP#ylJ|jF#Yj(v2G(1YlQ&RNTRj47;hnCfygrwq1h$mlJIrI56nUlm z?W35N8h34oCn*o}DC2a>!13LcZB8|ysf6e98xk{co%5xYQWOU~mMdi>DlR75a(S#A z6Y1!iH^Ct6VS?Lu8V6X+f*)fYoeV8U2bO8{6#(5R!>43``)EKI8CW&mLhn`ww#1SQ zt=b-8Xx*uuq0KC2j|gBg1YgUiwixLE1s@ieGjwY*GL=AryOaEe@1E&zpOCwOLJ9}n zhG>AVtV#+sRUS)TK`S69I+J8kpNFytA(iBP)eyW)qnIl70aBSMz^}*bRRn37xK$H#B1In6!^)waT zTZ$AF-1fK<3s6UAC+aW6@ Date: Mon, 21 Dec 2020 17:08:35 +0530 Subject: [PATCH 06/33] deleted unnecessary files --- .gitignore | 3 + {ocr-api-demo => api}/.dockerignore | 0 {ocr-api-demo => api}/.gitignore | 0 {ocr-api-demo => api}/Dockerfile | 0 {ocr-api-demo => api}/app.py | 0 {ocr-api-demo => api}/default | 0 .../docker-compose.yml.example | 0 {ocr-api-demo => api}/extractor/__init__.py | 0 {ocr-api-demo => api}/extractor/extract.py | 0 {ocr-api-demo => api}/extractor/format1.py | 0 {ocr-api-demo => api}/extractor/format2.py | 0 {ocr-api-demo => api}/extractor/format3.py | 0 {ocr-api-demo => api}/extractor/format4.py | 0 .../image_utils/image_to_string.py | 0 {ocr-api-demo => api}/image_utils/segment.py | 0 {ocr-api-demo => api}/nginx.conf | 0 {ocr-api-demo => api}/parser/__init__.py | 0 {ocr-api-demo => api}/parser/parser.py | 0 {ocr-api-demo => api}/requirements.txt | 0 {ocr-api-demo => api}/uploads/demo | 0 {ocr-api-demo => api}/wsgi.py | 0 {medical-ocr-poc => frontend}/.gitignore | 1 + {medical-ocr-poc => frontend}/README.md | 0 .../config/dev.env.js | 0 {medical-ocr-poc => frontend}/config/index.js | 0 .../config/prod.env.js | 0 {medical-ocr-poc => frontend}/deploy | 0 {medical-ocr-poc => frontend}/index.html | 0 .../package-lock.json | 0 {medical-ocr-poc => frontend}/package.json | 0 {medical-ocr-poc => frontend}/src/App.vue | 0 .../build => frontend/src/assets}/logo.png | Bin .../src/components/Main.vue | 0 {medical-ocr-poc => frontend}/src/main.js | 0 .../src/router/index.js | 0 {medical-ocr-poc => frontend}/static/.gitkeep | 0 medical-ocr-poc/.babelrc | 12 -- medical-ocr-poc/.editorconfig | 9 -- medical-ocr-poc/.postcssrc.js | 10 -- medical-ocr-poc/build/build.js | 41 ----- medical-ocr-poc/build/check-versions.js | 54 ------- medical-ocr-poc/build/utils.js | 101 ------------ medical-ocr-poc/build/vue-loader.conf.js | 22 --- medical-ocr-poc/build/webpack.base.conf.js | 82 ---------- medical-ocr-poc/build/webpack.dev.conf.js | 95 ------------ medical-ocr-poc/build/webpack.prod.conf.js | 145 ------------------ medical-ocr-poc/src/assets/logo.png | Bin 6849 -> 0 bytes 47 files changed, 4 insertions(+), 571 deletions(-) rename {ocr-api-demo => api}/.dockerignore (100%) rename {ocr-api-demo => api}/.gitignore (100%) rename {ocr-api-demo => api}/Dockerfile (100%) rename {ocr-api-demo => api}/app.py (100%) rename {ocr-api-demo => api}/default (100%) rename {ocr-api-demo => api}/docker-compose.yml.example (100%) rename {ocr-api-demo => api}/extractor/__init__.py (100%) rename {ocr-api-demo => api}/extractor/extract.py (100%) rename {ocr-api-demo => api}/extractor/format1.py (100%) rename {ocr-api-demo => api}/extractor/format2.py (100%) rename {ocr-api-demo => api}/extractor/format3.py (100%) rename {ocr-api-demo => api}/extractor/format4.py (100%) rename {ocr-api-demo => api}/image_utils/image_to_string.py (100%) rename {ocr-api-demo => api}/image_utils/segment.py (100%) rename {ocr-api-demo => api}/nginx.conf (100%) rename {ocr-api-demo => api}/parser/__init__.py (100%) rename {ocr-api-demo => api}/parser/parser.py (100%) rename {ocr-api-demo => api}/requirements.txt (100%) rename {ocr-api-demo => api}/uploads/demo (100%) rename {ocr-api-demo => api}/wsgi.py (100%) rename {medical-ocr-poc => frontend}/.gitignore (95%) rename {medical-ocr-poc => frontend}/README.md (100%) rename {medical-ocr-poc => frontend}/config/dev.env.js (100%) rename {medical-ocr-poc => frontend}/config/index.js (100%) rename {medical-ocr-poc => frontend}/config/prod.env.js (100%) rename {medical-ocr-poc => frontend}/deploy (100%) rename {medical-ocr-poc => frontend}/index.html (100%) rename {medical-ocr-poc => frontend}/package-lock.json (100%) rename {medical-ocr-poc => frontend}/package.json (100%) rename {medical-ocr-poc => frontend}/src/App.vue (100%) rename {medical-ocr-poc/build => frontend/src/assets}/logo.png (100%) rename {medical-ocr-poc => frontend}/src/components/Main.vue (100%) rename {medical-ocr-poc => frontend}/src/main.js (100%) rename {medical-ocr-poc => frontend}/src/router/index.js (100%) rename {medical-ocr-poc => frontend}/static/.gitkeep (100%) delete mode 100644 medical-ocr-poc/.babelrc delete mode 100644 medical-ocr-poc/.editorconfig delete mode 100644 medical-ocr-poc/.postcssrc.js delete mode 100644 medical-ocr-poc/build/build.js delete mode 100644 medical-ocr-poc/build/check-versions.js delete mode 100644 medical-ocr-poc/build/utils.js delete mode 100644 medical-ocr-poc/build/vue-loader.conf.js delete mode 100644 medical-ocr-poc/build/webpack.base.conf.js delete mode 100644 medical-ocr-poc/build/webpack.dev.conf.js delete mode 100644 medical-ocr-poc/build/webpack.prod.conf.js delete mode 100644 medical-ocr-poc/src/assets/logo.png diff --git a/.gitignore b/.gitignore index b6e4761..f8a92eb 100644 --- a/.gitignore +++ b/.gitignore @@ -127,3 +127,6 @@ dmypy.json # Pyre type checker .pyre/ +frontend/.editorconfig +frontend/.babelrc +frontend/.postcssrc.js diff --git a/ocr-api-demo/.dockerignore b/api/.dockerignore similarity index 100% rename from ocr-api-demo/.dockerignore rename to api/.dockerignore diff --git a/ocr-api-demo/.gitignore b/api/.gitignore similarity index 100% rename from ocr-api-demo/.gitignore rename to api/.gitignore diff --git a/ocr-api-demo/Dockerfile b/api/Dockerfile similarity index 100% rename from ocr-api-demo/Dockerfile rename to api/Dockerfile diff --git a/ocr-api-demo/app.py b/api/app.py similarity index 100% rename from ocr-api-demo/app.py rename to api/app.py diff --git a/ocr-api-demo/default b/api/default similarity index 100% rename from ocr-api-demo/default rename to api/default diff --git a/ocr-api-demo/docker-compose.yml.example b/api/docker-compose.yml.example similarity index 100% rename from ocr-api-demo/docker-compose.yml.example rename to api/docker-compose.yml.example diff --git a/ocr-api-demo/extractor/__init__.py b/api/extractor/__init__.py similarity index 100% rename from ocr-api-demo/extractor/__init__.py rename to api/extractor/__init__.py diff --git a/ocr-api-demo/extractor/extract.py b/api/extractor/extract.py similarity index 100% rename from ocr-api-demo/extractor/extract.py rename to api/extractor/extract.py diff --git a/ocr-api-demo/extractor/format1.py b/api/extractor/format1.py similarity index 100% rename from ocr-api-demo/extractor/format1.py rename to api/extractor/format1.py diff --git a/ocr-api-demo/extractor/format2.py b/api/extractor/format2.py similarity index 100% rename from ocr-api-demo/extractor/format2.py rename to api/extractor/format2.py diff --git a/ocr-api-demo/extractor/format3.py b/api/extractor/format3.py similarity index 100% rename from ocr-api-demo/extractor/format3.py rename to api/extractor/format3.py diff --git a/ocr-api-demo/extractor/format4.py b/api/extractor/format4.py similarity index 100% rename from ocr-api-demo/extractor/format4.py rename to api/extractor/format4.py diff --git a/ocr-api-demo/image_utils/image_to_string.py b/api/image_utils/image_to_string.py similarity index 100% rename from ocr-api-demo/image_utils/image_to_string.py rename to api/image_utils/image_to_string.py diff --git a/ocr-api-demo/image_utils/segment.py b/api/image_utils/segment.py similarity index 100% rename from ocr-api-demo/image_utils/segment.py rename to api/image_utils/segment.py diff --git a/ocr-api-demo/nginx.conf b/api/nginx.conf similarity index 100% rename from ocr-api-demo/nginx.conf rename to api/nginx.conf diff --git a/ocr-api-demo/parser/__init__.py b/api/parser/__init__.py similarity index 100% rename from ocr-api-demo/parser/__init__.py rename to api/parser/__init__.py diff --git a/ocr-api-demo/parser/parser.py b/api/parser/parser.py similarity index 100% rename from ocr-api-demo/parser/parser.py rename to api/parser/parser.py diff --git a/ocr-api-demo/requirements.txt b/api/requirements.txt similarity index 100% rename from ocr-api-demo/requirements.txt rename to api/requirements.txt diff --git a/ocr-api-demo/uploads/demo b/api/uploads/demo similarity index 100% rename from ocr-api-demo/uploads/demo rename to api/uploads/demo diff --git a/ocr-api-demo/wsgi.py b/api/wsgi.py similarity index 100% rename from ocr-api-demo/wsgi.py rename to api/wsgi.py diff --git a/medical-ocr-poc/.gitignore b/frontend/.gitignore similarity index 95% rename from medical-ocr-poc/.gitignore rename to frontend/.gitignore index 541a820..1450a6d 100644 --- a/medical-ocr-poc/.gitignore +++ b/frontend/.gitignore @@ -12,3 +12,4 @@ yarn-error.log* *.ntvs* *.njsproj *.sln +build/ diff --git a/medical-ocr-poc/README.md b/frontend/README.md similarity index 100% rename from medical-ocr-poc/README.md rename to frontend/README.md diff --git a/medical-ocr-poc/config/dev.env.js b/frontend/config/dev.env.js similarity index 100% rename from medical-ocr-poc/config/dev.env.js rename to frontend/config/dev.env.js diff --git a/medical-ocr-poc/config/index.js b/frontend/config/index.js similarity index 100% rename from medical-ocr-poc/config/index.js rename to frontend/config/index.js diff --git a/medical-ocr-poc/config/prod.env.js b/frontend/config/prod.env.js similarity index 100% rename from medical-ocr-poc/config/prod.env.js rename to frontend/config/prod.env.js diff --git a/medical-ocr-poc/deploy b/frontend/deploy similarity index 100% rename from medical-ocr-poc/deploy rename to frontend/deploy diff --git a/medical-ocr-poc/index.html b/frontend/index.html similarity index 100% rename from medical-ocr-poc/index.html rename to frontend/index.html diff --git a/medical-ocr-poc/package-lock.json b/frontend/package-lock.json similarity index 100% rename from medical-ocr-poc/package-lock.json rename to frontend/package-lock.json diff --git a/medical-ocr-poc/package.json b/frontend/package.json similarity index 100% rename from medical-ocr-poc/package.json rename to frontend/package.json diff --git a/medical-ocr-poc/src/App.vue b/frontend/src/App.vue similarity index 100% rename from medical-ocr-poc/src/App.vue rename to frontend/src/App.vue diff --git a/medical-ocr-poc/build/logo.png b/frontend/src/assets/logo.png similarity index 100% rename from medical-ocr-poc/build/logo.png rename to frontend/src/assets/logo.png diff --git a/medical-ocr-poc/src/components/Main.vue b/frontend/src/components/Main.vue similarity index 100% rename from medical-ocr-poc/src/components/Main.vue rename to frontend/src/components/Main.vue diff --git a/medical-ocr-poc/src/main.js b/frontend/src/main.js similarity index 100% rename from medical-ocr-poc/src/main.js rename to frontend/src/main.js diff --git a/medical-ocr-poc/src/router/index.js b/frontend/src/router/index.js similarity index 100% rename from medical-ocr-poc/src/router/index.js rename to frontend/src/router/index.js diff --git a/medical-ocr-poc/static/.gitkeep b/frontend/static/.gitkeep similarity index 100% rename from medical-ocr-poc/static/.gitkeep rename to frontend/static/.gitkeep diff --git a/medical-ocr-poc/.babelrc b/medical-ocr-poc/.babelrc deleted file mode 100644 index 3a280ba..0000000 --- a/medical-ocr-poc/.babelrc +++ /dev/null @@ -1,12 +0,0 @@ -{ - "presets": [ - ["env", { - "modules": false, - "targets": { - "browsers": ["> 1%", "last 2 versions", "not ie <= 8"] - } - }], - "stage-2" - ], - "plugins": ["transform-vue-jsx", "transform-runtime"] -} diff --git a/medical-ocr-poc/.editorconfig b/medical-ocr-poc/.editorconfig deleted file mode 100644 index 9d08a1a..0000000 --- a/medical-ocr-poc/.editorconfig +++ /dev/null @@ -1,9 +0,0 @@ -root = true - -[*] -charset = utf-8 -indent_style = space -indent_size = 2 -end_of_line = lf -insert_final_newline = true -trim_trailing_whitespace = true diff --git a/medical-ocr-poc/.postcssrc.js b/medical-ocr-poc/.postcssrc.js deleted file mode 100644 index eee3e92..0000000 --- a/medical-ocr-poc/.postcssrc.js +++ /dev/null @@ -1,10 +0,0 @@ -// https://github.com/michael-ciniawsky/postcss-load-config - -module.exports = { - "plugins": { - "postcss-import": {}, - "postcss-url": {}, - // to edit target browsers: use "browserslist" field in package.json - "autoprefixer": {} - } -} diff --git a/medical-ocr-poc/build/build.js b/medical-ocr-poc/build/build.js deleted file mode 100644 index 8f2ad8a..0000000 --- a/medical-ocr-poc/build/build.js +++ /dev/null @@ -1,41 +0,0 @@ -'use strict' -require('./check-versions')() - -process.env.NODE_ENV = 'production' - -const ora = require('ora') -const rm = require('rimraf') -const path = require('path') -const chalk = require('chalk') -const webpack = require('webpack') -const config = require('../config') -const webpackConfig = require('./webpack.prod.conf') - -const spinner = ora('building for production...') -spinner.start() - -rm(path.join(config.build.assetsRoot, config.build.assetsSubDirectory), err => { - if (err) throw err - webpack(webpackConfig, (err, stats) => { - spinner.stop() - if (err) throw err - process.stdout.write(stats.toString({ - colors: true, - modules: false, - children: false, // If you are using ts-loader, setting this to true will make TypeScript errors show up during build. - chunks: false, - chunkModules: false - }) + '\n\n') - - if (stats.hasErrors()) { - console.log(chalk.red(' Build failed with errors.\n')) - process.exit(1) - } - - console.log(chalk.cyan(' Build complete.\n')) - console.log(chalk.yellow( - ' Tip: built files are meant to be served over an HTTP server.\n' + - ' Opening index.html over file:// won\'t work.\n' - )) - }) -}) diff --git a/medical-ocr-poc/build/check-versions.js b/medical-ocr-poc/build/check-versions.js deleted file mode 100644 index 3ef972a..0000000 --- a/medical-ocr-poc/build/check-versions.js +++ /dev/null @@ -1,54 +0,0 @@ -'use strict' -const chalk = require('chalk') -const semver = require('semver') -const packageConfig = require('../package.json') -const shell = require('shelljs') - -function exec (cmd) { - return require('child_process').execSync(cmd).toString().trim() -} - -const versionRequirements = [ - { - name: 'node', - currentVersion: semver.clean(process.version), - versionRequirement: packageConfig.engines.node - } -] - -if (shell.which('npm')) { - versionRequirements.push({ - name: 'npm', - currentVersion: exec('npm --version'), - versionRequirement: packageConfig.engines.npm - }) -} - -module.exports = function () { - const warnings = [] - - for (let i = 0; i < versionRequirements.length; i++) { - const mod = versionRequirements[i] - - if (!semver.satisfies(mod.currentVersion, mod.versionRequirement)) { - warnings.push(mod.name + ': ' + - chalk.red(mod.currentVersion) + ' should be ' + - chalk.green(mod.versionRequirement) - ) - } - } - - if (warnings.length) { - console.log('') - console.log(chalk.yellow('To use this template, you must update following to modules:')) - console.log() - - for (let i = 0; i < warnings.length; i++) { - const warning = warnings[i] - console.log(' ' + warning) - } - - console.log() - process.exit(1) - } -} diff --git a/medical-ocr-poc/build/utils.js b/medical-ocr-poc/build/utils.js deleted file mode 100644 index e534fb0..0000000 --- a/medical-ocr-poc/build/utils.js +++ /dev/null @@ -1,101 +0,0 @@ -'use strict' -const path = require('path') -const config = require('../config') -const ExtractTextPlugin = require('extract-text-webpack-plugin') -const packageConfig = require('../package.json') - -exports.assetsPath = function (_path) { - const assetsSubDirectory = process.env.NODE_ENV === 'production' - ? config.build.assetsSubDirectory - : config.dev.assetsSubDirectory - - return path.posix.join(assetsSubDirectory, _path) -} - -exports.cssLoaders = function (options) { - options = options || {} - - const cssLoader = { - loader: 'css-loader', - options: { - sourceMap: options.sourceMap - } - } - - const postcssLoader = { - loader: 'postcss-loader', - options: { - sourceMap: options.sourceMap - } - } - - // generate loader string to be used with extract text plugin - function generateLoaders (loader, loaderOptions) { - const loaders = options.usePostCSS ? [cssLoader, postcssLoader] : [cssLoader] - - if (loader) { - loaders.push({ - loader: loader + '-loader', - options: Object.assign({}, loaderOptions, { - sourceMap: options.sourceMap - }) - }) - } - - // Extract CSS when that option is specified - // (which is the case during production build) - if (options.extract) { - return ExtractTextPlugin.extract({ - use: loaders, - fallback: 'vue-style-loader' - }) - } else { - return ['vue-style-loader'].concat(loaders) - } - } - - // https://vue-loader.vuejs.org/en/configurations/extract-css.html - return { - css: generateLoaders(), - postcss: generateLoaders(), - less: generateLoaders('less'), - sass: generateLoaders('sass', { indentedSyntax: true }), - scss: generateLoaders('sass'), - stylus: generateLoaders('stylus'), - styl: generateLoaders('stylus') - } -} - -// Generate loaders for standalone style files (outside of .vue) -exports.styleLoaders = function (options) { - const output = [] - const loaders = exports.cssLoaders(options) - - for (const extension in loaders) { - const loader = loaders[extension] - output.push({ - test: new RegExp('\\.' + extension + '$'), - use: loader - }) - } - - return output -} - -exports.createNotifierCallback = () => { - const notifier = require('node-notifier') - - return (severity, errors) => { - if (severity !== 'error') return - - const error = errors[0] - const filename = error.file && error.file.split('!').pop() - - notifier.notify({ - title: packageConfig.name, - message: severity + ': ' + error.name, - subtitle: filename || '', - icon: path.join(__dirname, 'logo.png') - }) - } -} diff --git a/medical-ocr-poc/build/vue-loader.conf.js b/medical-ocr-poc/build/vue-loader.conf.js deleted file mode 100644 index 33ed58b..0000000 --- a/medical-ocr-poc/build/vue-loader.conf.js +++ /dev/null @@ -1,22 +0,0 @@ -'use strict' -const utils = require('./utils') -const config = require('../config') -const isProduction = process.env.NODE_ENV === 'production' -const sourceMapEnabled = isProduction - ? config.build.productionSourceMap - : config.dev.cssSourceMap - -module.exports = { - loaders: utils.cssLoaders({ - sourceMap: sourceMapEnabled, - extract: isProduction - }), - cssSourceMap: sourceMapEnabled, - cacheBusting: config.dev.cacheBusting, - transformToRequire: { - video: ['src', 'poster'], - source: 'src', - img: 'src', - image: 'xlink:href' - } -} diff --git a/medical-ocr-poc/build/webpack.base.conf.js b/medical-ocr-poc/build/webpack.base.conf.js deleted file mode 100644 index a07e683..0000000 --- a/medical-ocr-poc/build/webpack.base.conf.js +++ /dev/null @@ -1,82 +0,0 @@ -'use strict' -const path = require('path') -const utils = require('./utils') -const config = require('../config') -const vueLoaderConfig = require('./vue-loader.conf') - -function resolve (dir) { - return path.join(__dirname, '..', dir) -} - - - -module.exports = { - context: path.resolve(__dirname, '../'), - entry: { - app: './src/main.js' - }, - output: { - path: config.build.assetsRoot, - filename: '[name].js', - publicPath: process.env.NODE_ENV === 'production' - ? config.build.assetsPublicPath - : config.dev.assetsPublicPath - }, - resolve: { - extensions: ['.js', '.vue', '.json'], - alias: { - 'vue$': 'vue/dist/vue.esm.js', - '@': resolve('src'), - } - }, - module: { - rules: [ - { - test: /\.vue$/, - loader: 'vue-loader', - options: vueLoaderConfig - }, - { - test: /\.js$/, - loader: 'babel-loader', - include: [resolve('src'), resolve('test'), resolve('node_modules/webpack-dev-server/client')] - }, - { - test: /\.(png|jpe?g|gif|svg)(\?.*)?$/, - loader: 'url-loader', - options: { - limit: 10000, - name: utils.assetsPath('img/[name].[hash:7].[ext]') - } - }, - { - test: /\.(mp4|webm|ogg|mp3|wav|flac|aac)(\?.*)?$/, - loader: 'url-loader', - options: { - limit: 10000, - name: utils.assetsPath('media/[name].[hash:7].[ext]') - } - }, - { - test: /\.(woff2?|eot|ttf|otf)(\?.*)?$/, - loader: 'url-loader', - options: { - limit: 10000, - name: utils.assetsPath('fonts/[name].[hash:7].[ext]') - } - } - ] - }, - node: { - // prevent webpack from injecting useless setImmediate polyfill because Vue - // source contains it (although only uses it if it's native). - setImmediate: false, - // prevent webpack from injecting mocks to Node native modules - // that does not make sense for the client - dgram: 'empty', - fs: 'empty', - net: 'empty', - tls: 'empty', - child_process: 'empty' - } -} diff --git a/medical-ocr-poc/build/webpack.dev.conf.js b/medical-ocr-poc/build/webpack.dev.conf.js deleted file mode 100644 index 070ae22..0000000 --- a/medical-ocr-poc/build/webpack.dev.conf.js +++ /dev/null @@ -1,95 +0,0 @@ -'use strict' -const utils = require('./utils') -const webpack = require('webpack') -const config = require('../config') -const merge = require('webpack-merge') -const path = require('path') -const baseWebpackConfig = require('./webpack.base.conf') -const CopyWebpackPlugin = require('copy-webpack-plugin') -const HtmlWebpackPlugin = require('html-webpack-plugin') -const FriendlyErrorsPlugin = require('friendly-errors-webpack-plugin') -const portfinder = require('portfinder') - -const HOST = process.env.HOST -const PORT = process.env.PORT && Number(process.env.PORT) - -const devWebpackConfig = merge(baseWebpackConfig, { - module: { - rules: utils.styleLoaders({ sourceMap: config.dev.cssSourceMap, usePostCSS: true }) - }, - // cheap-module-eval-source-map is faster for development - devtool: config.dev.devtool, - - // these devServer options should be customized in /config/index.js - devServer: { - clientLogLevel: 'warning', - historyApiFallback: { - rewrites: [ - { from: /.*/, to: path.posix.join(config.dev.assetsPublicPath, 'index.html') }, - ], - }, - hot: true, - contentBase: false, // since we use CopyWebpackPlugin. - compress: true, - host: HOST || config.dev.host, - port: PORT || config.dev.port, - open: config.dev.autoOpenBrowser, - overlay: config.dev.errorOverlay - ? { warnings: false, errors: true } - : false, - publicPath: config.dev.assetsPublicPath, - proxy: config.dev.proxyTable, - quiet: true, // necessary for FriendlyErrorsPlugin - watchOptions: { - poll: config.dev.poll, - } - }, - plugins: [ - new webpack.DefinePlugin({ - 'process.env': require('../config/dev.env') - }), - new webpack.HotModuleReplacementPlugin(), - new webpack.NamedModulesPlugin(), // HMR shows correct file names in console on update. - new webpack.NoEmitOnErrorsPlugin(), - // https://github.com/ampedandwired/html-webpack-plugin - new HtmlWebpackPlugin({ - filename: 'index.html', - template: 'index.html', - inject: true - }), - // copy custom static assets - new CopyWebpackPlugin([ - { - from: path.resolve(__dirname, '../static'), - to: config.dev.assetsSubDirectory, - ignore: ['.*'] - } - ]) - ] -}) - -module.exports = new Promise((resolve, reject) => { - portfinder.basePort = process.env.PORT || config.dev.port - portfinder.getPort((err, port) => { - if (err) { - reject(err) - } else { - // publish the new Port, necessary for e2e tests - process.env.PORT = port - // add port to devServer config - devWebpackConfig.devServer.port = port - - // Add FriendlyErrorsPlugin - devWebpackConfig.plugins.push(new FriendlyErrorsPlugin({ - compilationSuccessInfo: { - messages: [`Your application is running here: http://${devWebpackConfig.devServer.host}:${port}`], - }, - onErrors: config.dev.notifyOnErrors - ? utils.createNotifierCallback() - : undefined - })) - - resolve(devWebpackConfig) - } - }) -}) diff --git a/medical-ocr-poc/build/webpack.prod.conf.js b/medical-ocr-poc/build/webpack.prod.conf.js deleted file mode 100644 index d9f99f6..0000000 --- a/medical-ocr-poc/build/webpack.prod.conf.js +++ /dev/null @@ -1,145 +0,0 @@ -'use strict' -const path = require('path') -const utils = require('./utils') -const webpack = require('webpack') -const config = require('../config') -const merge = require('webpack-merge') -const baseWebpackConfig = require('./webpack.base.conf') -const CopyWebpackPlugin = require('copy-webpack-plugin') -const HtmlWebpackPlugin = require('html-webpack-plugin') -const ExtractTextPlugin = require('extract-text-webpack-plugin') -const OptimizeCSSPlugin = require('optimize-css-assets-webpack-plugin') -const UglifyJsPlugin = require('uglifyjs-webpack-plugin') - -const env = require('../config/prod.env') - -const webpackConfig = merge(baseWebpackConfig, { - module: { - rules: utils.styleLoaders({ - sourceMap: config.build.productionSourceMap, - extract: true, - usePostCSS: true - }) - }, - devtool: config.build.productionSourceMap ? config.build.devtool : false, - output: { - path: config.build.assetsRoot, - filename: utils.assetsPath('js/[name].[chunkhash].js'), - chunkFilename: utils.assetsPath('js/[id].[chunkhash].js') - }, - plugins: [ - // http://vuejs.github.io/vue-loader/en/workflow/production.html - new webpack.DefinePlugin({ - 'process.env': env - }), - new UglifyJsPlugin({ - uglifyOptions: { - compress: { - warnings: false - } - }, - sourceMap: config.build.productionSourceMap, - parallel: true - }), - // extract css into its own file - new ExtractTextPlugin({ - filename: utils.assetsPath('css/[name].[contenthash].css'), - // Setting the following option to `false` will not extract CSS from codesplit chunks. - // Their CSS will instead be inserted dynamically with style-loader when the codesplit chunk has been loaded by webpack. - // It's currently set to `true` because we are seeing that sourcemaps are included in the codesplit bundle as well when it's `false`, - // increasing file size: https://github.com/vuejs-templates/webpack/issues/1110 - allChunks: true, - }), - // Compress extracted CSS. We are using this plugin so that possible - // duplicated CSS from different components can be deduped. - new OptimizeCSSPlugin({ - cssProcessorOptions: config.build.productionSourceMap - ? { safe: true, map: { inline: false } } - : { safe: true } - }), - // generate dist index.html with correct asset hash for caching. - // you can customize output by editing /index.html - // see https://github.com/ampedandwired/html-webpack-plugin - new HtmlWebpackPlugin({ - filename: config.build.index, - template: 'index.html', - inject: true, - minify: { - removeComments: true, - collapseWhitespace: true, - removeAttributeQuotes: true - // more options: - // https://github.com/kangax/html-minifier#options-quick-reference - }, - // necessary to consistently work with multiple chunks via CommonsChunkPlugin - chunksSortMode: 'dependency' - }), - // keep module.id stable when vendor modules does not change - new webpack.HashedModuleIdsPlugin(), - // enable scope hoisting - new webpack.optimize.ModuleConcatenationPlugin(), - // split vendor js into its own file - new webpack.optimize.CommonsChunkPlugin({ - name: 'vendor', - minChunks (module) { - // any required modules inside node_modules are extracted to vendor - return ( - module.resource && - /\.js$/.test(module.resource) && - module.resource.indexOf( - path.join(__dirname, '../node_modules') - ) === 0 - ) - } - }), - // extract webpack runtime and module manifest to its own file in order to - // prevent vendor hash from being updated whenever app bundle is updated - new webpack.optimize.CommonsChunkPlugin({ - name: 'manifest', - minChunks: Infinity - }), - // This instance extracts shared chunks from code splitted chunks and bundles them - // in a separate chunk, similar to the vendor chunk - // see: https://webpack.js.org/plugins/commons-chunk-plugin/#extra-async-commons-chunk - new webpack.optimize.CommonsChunkPlugin({ - name: 'app', - async: 'vendor-async', - children: true, - minChunks: 3 - }), - - // copy custom static assets - new CopyWebpackPlugin([ - { - from: path.resolve(__dirname, '../static'), - to: config.build.assetsSubDirectory, - ignore: ['.*'] - } - ]) - ] -}) - -if (config.build.productionGzip) { - const CompressionWebpackPlugin = require('compression-webpack-plugin') - - webpackConfig.plugins.push( - new CompressionWebpackPlugin({ - asset: '[path].gz[query]', - algorithm: 'gzip', - test: new RegExp( - '\\.(' + - config.build.productionGzipExtensions.join('|') + - ')$' - ), - threshold: 10240, - minRatio: 0.8 - }) - ) -} - -if (config.build.bundleAnalyzerReport) { - const BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin - webpackConfig.plugins.push(new BundleAnalyzerPlugin()) -} - -module.exports = webpackConfig diff --git a/medical-ocr-poc/src/assets/logo.png b/medical-ocr-poc/src/assets/logo.png deleted file mode 100644 index f3d2503fc2a44b5053b0837ebea6e87a2d339a43..0000000000000000000000000000000000000000 GIT binary patch literal 0 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a/api/extractor/format1.py +++ b/api/extractor/format1.py @@ -240,17 +240,26 @@ def extract_details(text): # address = address.strip() patient =[ - ("name", name), - # "gender"), gender), + ("Patient Information", + [ ("name", name), + # "gender"), gender),o ("phone", phone), ("dob", dob), ("height", height), ("weight", weight), - ("address", addr), - ("Name", ename), + ("address", addr) + + ]), + ("Emergency Information", + + [ ("Name", ename), ("Address", emr_addr), ("home phone", home_phone), - ("work phone", work), + ("work phone", work) + ]), + + ("General Medical History", + [ ("Chicken Pox (Varicella)" ,chicken), ("Measles", meas), ("Have you had the Hepatitis B vaccination?",hepa), @@ -261,6 +270,8 @@ def extract_details(text): ("Have medical insurance?",havemed), ("Any Allergies",alrg), ("Any Medications Regularly",madication) + + ]) ] diff --git a/frontend/src/components/Main.vue b/frontend/src/components/Main.vue index 4f59fbb..e0ee627 100644 --- a/frontend/src/components/Main.vue +++ b/frontend/src/components/Main.vue @@ -19,18 +19,18 @@ Upload to server -

Patient Information

-
- - +

{{ x[0]}}

+
+ +

-

Emergency Information

+ +
-

General Medical History

@@ -115,4 +115,4 @@ export default { .result *{ text-transform: uppercase !important; } - \ No newline at end of file + From 6f960eea976b7e482c933640a59d945f898d14dc Mon Sep 17 00:00:00 2001 From: Karandeep Singh Grover <30365139+groverkds@users.noreply.github.com> Date: Tue, 22 Dec 2020 18:48:26 +0530 Subject: [PATCH 08/33] Update .dockerignore --- api/.dockerignore | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/api/.dockerignore b/api/.dockerignore index 0ee3373..14270e6 100644 --- a/api/.dockerignore +++ b/api/.dockerignore @@ -2,4 +2,4 @@ development.yml Dockerfile production.yml docker-compose.yml -docker-compose.yml.example \ No newline at end of file +docker-compose.yml.example From 7cf987387093602c59f1dd7506ce3f40c04b68aa Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Mon, 25 Jan 2021 18:34:28 +0530 Subject: [PATCH 09/33] Added: indentation --- .vscode/settings.json | 5 + api/app.py | 10 +- api/extractor/extract.py | 44 +++-- api/extractor/format1.py | 337 ++++++++++++++++++++------------------- api/parser/parser.py | 4 +- frontend/.gitignore | 1 - 6 files changed, 202 insertions(+), 199 deletions(-) create mode 100644 .vscode/settings.json diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..9fadd3a --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,5 @@ +{ + "python.linting.pylintEnabled": false, + "python.linting.flake8Enabled": true, + "python.linting.enabled": true +} \ No newline at end of file diff --git a/api/app.py b/api/app.py index 0074519..b301345 100644 --- a/api/app.py +++ b/api/app.py @@ -47,14 +47,13 @@ def extract_fields(): + get_random_string(32) + ".pdf" file.save(file_path) text, patient, error = parse(file_path, format) - - app.logger.info("-------------------------------------------------------") + app.logger.info("----------------------------------") app.logger.info(patient) - app.logger.info("-------------------------------------------------------") + app.logger.info("-----------------------------------") app.logger.info(error) - app.logger.info("-------------------------------------------------------") + app.logger.info("---------------------------------------") app.logger.info(text) - app.logger.info("-------------------------------------------------------") + app.logger.info("------------------------------------------") response = app.response_class( response=json.dumps({ "text": text, @@ -78,7 +77,6 @@ def extract_fields(): ) if file_path: os.remove(file_path) - return response diff --git a/api/extractor/extract.py b/api/extractor/extract.py index de861c8..72217e0 100644 --- a/api/extractor/extract.py +++ b/api/extractor/extract.py @@ -5,8 +5,6 @@ from extractor import format4 from extractor import format1 from image_utils.image_to_string import from_image_to_string -from image_utils.image_to_string import from_lines_to_string -import logging import numpy as np functions = { @@ -19,49 +17,45 @@ def clarify_text(img): img2 = img.copy().astype('uint8') - disp_img = cv2.cvtColor(img2,cv2.COLOR_BGR2GRAY).astype('uint8') -# blur = cv2.GaussianBlur(disp_img,(3,3),0).astype('uint8') - ret3,th3 = cv2.threshold(disp_img, 0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU) + disp_img = cv2.cvtColor(img2, cv2.COLOR_BGR2GRAY).astype('uint8') + # blur = cv2.GaussianBlur(disp_img, (3, 3), 0).astype('uint8') + ret3, th3 = cv2.threshold(disp_img, 0, 255, cv2.THRESH_BINARY+cv2.THRESH_OTSU) # noqa disp_img = cv2.medianBlur(th3, 3) - disp_img = cv2.resize(disp_img,None,fx=5, fy=5, interpolation = cv2.INTER_CUBIC) - kernel = np.ones((3,3),np.uint8) - dilated = cv2.dilate(th3,kernel,iterations = 1) - eroded = cv2.erode(dilated,kernel,iterations = 1) - dilated = cv2.dilate(eroded,kernel,iterations = 1) - eroded = cv2.erode(dilated,kernel,iterations = 1) + disp_img = cv2.resize(disp_img, None, fx=5, fy=5, interpolation=cv2.INTER_CUBIC) # noqa + kernel = np.ones((3, 3), np.uint8) + dilated = cv2.dilate(th3, kernel, iterations=1) + eroded = cv2.erode(dilated, kernel, iterations=1) + dilated = cv2.dilate(eroded, kernel, iterations=1) + eroded = cv2.erode(dilated, kernel, iterations=1) return eroded + + def get_information(img_list, file_format): """ extracts information from images returns dict containing information """ - #first pass + # first pass app.logger.info("milestone") for i in range(len(img_list)): - gray = cv2.cvtColor(np.array(img_list[i]), cv2.COLOR_BGR2GRAY) - img = cv2.resize(gray, None, fx=0.5, fy=0.5, interpolation=cv2.INTER_AREA) - img = cv2.resize(img, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) - img_list[i] = cv2.threshold(img, 127, 255, cv2.THRESH_BINARY)[1] - + temp = cv2.resize(gray, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) # noqa + img_list[i] = cv2.adaptiveThreshold(temp, 255, cv2.ADAPTIVE_THRESH_GAUSSIAN_C, cv2.THRESH_BINARY, 61, 11) # noqa text = from_image_to_string(img_list) app.logger.info(text) patient = functions[file_format].extract_details(text) - - #check for missing values in patient - + # check for missing values in patient # empty_values = [] # for k, v in patient.items(): # if v == '': # empty_values.append(k) - # if empty_values: # text_2 = from_lines_to_string(img_list) # for key in empty_values: - # patient[key] = functions[file_format].extract_details(text_2, key) + # patient[key] = functions[file_format].extract_details(text_2, key) # noqa - #returned well formated patient information - # patient = functions[file_format].map_to_format(patient) - return text, patient \ No newline at end of file + # returned well formated patient information + # patient = functions[file_format].map_to_format(patient) + return text, patient diff --git a/api/extractor/format1.py b/api/extractor/format1.py index edeada5..fff23f0 100644 --- a/api/extractor/format1.py +++ b/api/extractor/format1.py @@ -5,274 +5,281 @@ def extract_details(text): name_regex = r"Patient Information\n*([a-zA-Z0-9, ]+)" name_search = re.search(name_regex, text) - if name_search != None: - name_search=name_search.groups() + if name_search is not None: + name_search = name_search.groups() name = str(name_search[0]) - name = " ".join(name.strip().split(",")[::-1]).strip() else: - name="" + name = "" # gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" # gender_search = re.search(gender_regex, text).groups() - # if gender_search != None: + # if gender_search is not None: # gender = str(gender_search[0]) # gender = gender.strip() phone_search = re.search(r"(\([\d]+\) [\d]+\-[\d]+)", text) - - if phone_search != None: - phone_search=phone_search.groups() + + if phone_search is not None: + phone_search = phone_search.groups() phone_search = str(phone_search[0]) phone = phone_search.strip() else: - phone="" - + phone = "" dob_regex = r"Birth Date\n*([A-Za-z0-9, ]+)" dob_search = re.search(dob_regex, text) - if dob_search != None: - dob_search=dob_search.groups() + if dob_search is not None: + dob_search = dob_search.groups() dob = str(dob_search[0]) dob = dob.strip() else: - dob="" + dob = "" - height_search=re.search(r"Height:\n*([\d]+)", text) - if height_search != None: - height_search=height_search.groups() + height_search = re.search(r"Height:\n*([\d]+)", text) + if height_search is not None: + height_search = height_search.groups() height = str(height_search[0]) height = height.strip() else: - height="" + height = "" - weight_search=re.search(r"Weight:\n*([\d]+)", text) - if weight_search != None: - weight_search=weight_search.groups() + weight_search = re.search(r"Weight:\n*([\d]+)", text) + if weight_search is not None: + weight_search = weight_search.groups() weight = str(weight_search[0]) weight = weight.strip() else: - weight="" - - address_search=re.search(r"\([\d]+\) [\d]+\-[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) - addr="" - if address_search != None: - address_search=address_search.groups() + weight = "" + + address_search = re.search( + r"\([\d]+\) [\d]+\-[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text + ) + addr = "" + if address_search is not None: + address_search = address_search.groups() address = str(address_search[0]) - addr1=address.split("\n\n") - tempaddr=addr1[0] - addr=str(tempaddr) + addr1 = address.split("\n\n") + tempaddr = addr1[0] + addr = str(tempaddr) ' '.join(addr.splitlines()) addr = addr.strip() else: - addr="" + addr = "" - - emr_name=re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text) - if emr_name != None: - emr_name=emr_name.groups() + emr_name = re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text) + if emr_name is not None: + emr_name = emr_name.groups() ename = str(emr_name[0]) ename = ename.strip() else: - ename="" + ename = "" - emr_addr=re.search(r"Height:\n*[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) - if emr_addr != None: - emr_addr=emr_addr.groups() + emr_addr = re.search(r"Height:\n*[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) + if emr_addr is not None: + emr_addr = emr_addr.groups() emr_add = str(emr_addr[0]) - emr_add1=emr_add.split("\n\n") - tempemr=emr_add1[0] - emr_addr=str(tempemr) - emr_addr.replace("\n"," ") + emr_add1 = emr_add.split("\n\n") + tempemr = emr_add1[0] + emr_addr = str(tempemr) + emr_addr.replace("\n", " ") emr_addr = emr_addr.strip() else: - emr_addr="" - - home_phone=re.search(r"Home phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) - if home_phone != None: - home_phone=home_phone.groups() + emr_addr = "" + + home_phone = re.search(r"Home phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) + if home_phone is not None: + home_phone = home_phone.groups() home = str(home_phone[0]) home = home.strip() else: - home="" + home = "" - work_phone=re.search(r"Work phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) - if work_phone != None: - work_phone=work_phone.groups() + work_phone = re.search(r"Work phone\n*(\([\d]+\) [\d]+\-[\d]+)", text) + if work_phone is not None: + work_phone = work_phone.groups() work = str(work_phone[0]) work = work.strip() else: - work="" + work = "" - chicken_search=re.search(r"Chicken Pox \(Varicella\):\n*([a-zA-Z0-9, \/]+)", text) - if chicken_search != None: - chicken_search=chicken_search.groups() + chicken_search = re.search( + r"Chicken Pox \(Varicella\):\n*([a-zA-Z0-9, \/]+)", text + ) + if chicken_search is not None: + chicken_search = chicken_search.groups() chicken = str(chicken_search[0]) chicken = chicken.strip() else: - chicken="" + chicken = "" - measles_search=re.search(r"Measles:\n\n([a-zA-z0-9, \/]+)", text) - if measles_search != None: - measles_search=measles_search.groups() + measles_search = re.search(r"Measles:\n\n([a-zA-z0-9, \/]+)", text) + if measles_search is not None: + measles_search = measles_search.groups() meas = str(measles_search[0]) meas = meas.strip() else: - meas="" + meas = "" - hepa_search=re.search(r"Have you had the Hepatitis B vaccination\?\n\n([a-zA-z0-9, ]+)", text) - if hepa_search != None: - hepa_search=hepa_search.groups() + hepa_search = re.search( + r"Have you had the Hepatitis B vaccination\?\n\n([a-zA-z0-9, ]+)", text + ) + if hepa_search is not None: + hepa_search = hepa_search.groups() hepa = str(hepa_search[0]) hepa = hepa.strip() else: - hepa="" - - med_search=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Page*", text) - med_search1=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Create*", text) - med_search2=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*€}", text) - med_search3=re.search(r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Name", text) - - if med_search != None: - med_search=med_search.groups() + hepa = "" + + med_search = re.search( + r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Page*", text + ) + med_search1 = re.search( + r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Create*", text + ) + med_search2 = re.search( + r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*€}", text + ) + med_search3 = re.search( + r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Name", text + ) + + if med_search is not None: + med_search = med_search.groups() medess = str(med_search[0]) - med=medess.strip() - elif med_search1 != None: - med_search1=med_search1.groups() + med = medess.strip() + elif med_search1 is not None: + med_search1 = med_search1.groups() medess = str(med_search1[0]) - med=medess.strip() - elif med_search2 != None: - med_search2=med_search2.groups() + med = medess.strip() + elif med_search2 is not None: + med_search2 = med_search2.groups() med2 = str(med_search2[0]) - med=med2.strip() - elif med_search3 != None: - med_search3=med_search3.groups() + med = med2.strip() + elif med_search3 is not None: + med_search3 = med_search3.groups() med2 = str(med_search3[0]) - med=med2.strip() + med = med2.strip() else: - med="" + med = "" - - ins_search=re.search(r"Name of Insurance Company:\n*([a-zA-Z, ]+)", text) - if ins_search != None: - ins_search=ins_search.groups() + ins_search = re.search(r"Name of Insurance Company:\n*([a-zA-Z, ]+)", text) + if ins_search is not None: + ins_search = ins_search.groups() insurance = str(ins_search[0]) insurance = insurance.strip() else: - insurance="" - - pol_search=re.search(r"Policy Number:\n*[a-zA-Z\s, ]*([0-9]+)", text) - if pol_search != None: - pol_search=pol_search.groups() + insurance = "" + + pol_search = re.search(r"Policy Number:\n*[a-zA-Z\s, ]*([0-9]+)", text) + if pol_search is not None: + pol_search = pol_search.groups() policyno = str(pol_search[0]) policyno = policyno.strip() else: - policyno="" + policyno = "" - exp_search=re.search(r"Expiry Date:\n*([a-zA-Z0-9, ]+)", text) - if exp_search != None: - exp_search=exp_search.groups() + exp_search = re.search(r"Expiry Date:\n*([a-zA-Z0-9, ]+)", text) + if exp_search is not None: + exp_search = exp_search.groups() expdate = str(exp_search[0]) expdate = expdate.strip() else: - expdate="" + expdate = "" - hm_search=re.search(r"Do you have medical insurance\?\n*([a-zA-Z0-9, \/]+)", text) - if hm_search != None: - hm_search=hm_search.groups() + hm_search = re.search( + r"Do you have medical insurance\?\n*([a-zA-Z0-9, \/]+)", text + ) + if hm_search is not None: + hm_search = hm_search.groups() havemed = str(hm_search[0]) havemed = havemed.strip() else: - havemed="" - - + havemed = "" - - - alrgess_search=re.search(r"List any allergies:\n*([0-9A-Za-z\n\s,.\/]+)\n\n", text) - if alrgess_search != None: - alrgess_search=alrgess_search.groups() + alrgess_search = re.search( + r"List any allergies:\n*([0-9A-Za-z\n\s,.\/]+)\n\n", text + ) + if alrgess_search is not None: + alrgess_search = alrgess_search.groups() alrgess = str(alrgess_search[0]) - alrg1=alrgess.split("\n\n") - tempalrg=alrg1[0] - alrg=str(tempalrg) - alrg.replace("\n"," ") - alrg=alrg.strip() + alrg1 = alrgess.split("\n\n") + tempalrg = alrg1[0] + alrg = str(tempalrg) + alrg.replace("\n", " ") + alrg = alrg.strip() else: - alrg="" - - - madicationess_search=re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) - mad=re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) - mad2= re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*€}", text) - mad3= re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*", text) - - - if mad != None: - mad=mad.groups() - mad=str(mad[0]) - madication=mad.strip() - elif madicationess_search != None: - madicationess_search=madicationess_search.groups() + alrg = "" + + madicationess_search = re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) # noqa + mad = re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) # noqa + mad2 = re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*€}", text) # noqa + mad3 = re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*", text) # noqa + + if mad is not None: + mad = mad.groups() + mad = str(mad[0]) + madication = mad.strip() + elif madicationess_search is not None: + madicationess_search = madicationess_search.groups() madicationess = str(madicationess_search[0]) - madication=madicationess.strip() - elif mad2 != None: - mad2=mad2.groups() + madication = madicationess.strip() + elif mad2 is not None: + mad2 = mad2.groups() mad2 = str(mad2[0]) - madication=mad2.strip() - elif mad3 !=None: - mad3=mad3.groups() + madication = mad2.strip() + elif mad3 is not None: + mad3 = mad3.groups() mad2 = str(mad3[0]) - madication=mad2.strip() + madication = mad2.strip() else: - madication="" + madication = "" - - - # Date of Birth: 12/10/1948 Age: 70 y.o. - # address_regex = r"Date of Birth:[ ]+[0-9\/]+[ ]*Age:[ ]*[0-7 ]+y.o.[\n]+Address:[ ]+([0-9A-Za-z\n\s]+)" + # address_regex = r" + # Date of Birth:[ ]+[0-9\/]+[ ]*Age:[ ]*[0-7 ]+y.o.[\n]+Address:[ ]+ + # ([0-9A-Za-z\n\s]+)" # address_search = re.search(address_regex, text).groups() - # if address_search != None: + # if address_search is not None: # address = str(address_search[0]) # address = address.strip() - patient =[ + patient = [ ("Patient Information", - [ ("name", name), + [ + ("name", name), # "gender"), gender),o ("phone", phone), ("dob", dob), ("height", height), ("weight", weight), ("address", addr) - - ]), + ] + ), ("Emergency Information", - - [ ("Name", ename), - ("Address", emr_addr), - ("home phone", home_phone), - ("work phone", work) - ]), + [ + ("Name", ename), + ("Address", emr_addr), + ("home phone", home_phone), + ("work phone", work) + ] + ), ("General Medical History", - [ - ("Chicken Pox (Varicella)" ,chicken), + [ + ("Chicken Pox (Varicella)", chicken), ("Measles", meas), - ("Have you had the Hepatitis B vaccination?",hepa), - ("Medical Problems",med), - ("Name of Insuarance Company",insurance), - ("Policy Number",policyno), - ("Expiry Date",expdate), - ("Have medical insurance?",havemed), - ("Any Allergies",alrg), - ("Any Medications Regularly",madication) - - ]) + ("Have you had the Hepatitis B vaccination?", hepa), + ("Medical Problems", med), + ("Name of Insuarance Company", insurance), + ("Policy Number", policyno), + ("Expiry Date", expdate), + ("Have medical insurance?", havemed), + ("Any Allergies", alrg), + ("Any Medications Regularly", madication) + ] + ) ] - - return patient diff --git a/api/parser/parser.py b/api/parser/parser.py index 19adede..f6cceba 100644 --- a/api/parser/parser.py +++ b/api/parser/parser.py @@ -9,6 +9,7 @@ sys.path.append(PARENT_DIR) logging.basicConfig(level=logging.DEBUG) + def parse(file_name, file_format): """ coverts pdf to a list of image @@ -16,7 +17,7 @@ def parse(file_name, file_format): """ pages = convert_from_path(file_name, 500) - text="" + text = "" # app.logger.info("sfd"); error = None try: @@ -26,4 +27,3 @@ def parse(file_name, file_format): patient = None error = e return text, patient, error - diff --git a/frontend/.gitignore b/frontend/.gitignore index 1450a6d..541a820 100644 --- a/frontend/.gitignore +++ b/frontend/.gitignore @@ -12,4 +12,3 @@ yarn-error.log* *.ntvs* *.njsproj *.sln -build/ From 33d711a9663a7dc6d89fb9ee48b0d6654262ca52 Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 13:36:55 +0530 Subject: [PATCH 10/33] Modified: variable names modified --- api/extractor/extract.py | 2 -- api/extractor/format1.py | 42 +++++++++++++++++++------------------- api/image_utils/segment.py | 29 ++++++++++++-------------- 3 files changed, 34 insertions(+), 39 deletions(-) diff --git a/api/extractor/extract.py b/api/extractor/extract.py index 72217e0..6a342f6 100644 --- a/api/extractor/extract.py +++ b/api/extractor/extract.py @@ -36,8 +36,6 @@ def get_information(img_list, file_format): returns dict containing information """ # first pass - app.logger.info("milestone") - for i in range(len(img_list)): gray = cv2.cvtColor(np.array(img_list[i]), cv2.COLOR_BGR2GRAY) temp = cv2.resize(gray, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) # noqa diff --git a/api/extractor/format1.py b/api/extractor/format1.py index fff23f0..6191060 100644 --- a/api/extractor/format1.py +++ b/api/extractor/format1.py @@ -71,10 +71,10 @@ def extract_details(text): emr_name = re.search(r"Case of Emergency\n\n([a-zA-Z0-9, ]+)", text) if emr_name is not None: emr_name = emr_name.groups() - ename = str(emr_name[0]) - ename = ename.strip() + emergency_name = str(emr_name[0]) + emergency_name = emergency_name.strip() else: - ename = "" + emergency_name = "" emr_addr = re.search(r"Height:\n*[\d]+\n\n([0-9A-Za-z\n\s\,]+)", text) if emr_addr is not None: @@ -114,9 +114,9 @@ def extract_details(text): else: chicken = "" - measles_search = re.search(r"Measles:\n\n([a-zA-z0-9, \/]+)", text) + measles_search = re.search(r"Measles:\n*([a-zA-z0-9, \/]+)\n*", text) if measles_search is not None: - measles_search = measles_search.groups() + measles_search = measles_search.groups() meas = str(measles_search[0]) meas = meas.strip() else: @@ -132,10 +132,10 @@ def extract_details(text): else: hepa = "" - med_search = re.search( - r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Page*", text - ) med_search1 = re.search( + r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Page", text + ) + med_search = re.search( r"headaches\)\:\n*([0-9A-Za-z\n\s,.\/]+)\n*Create*", text ) med_search2 = re.search( @@ -198,21 +198,21 @@ def extract_details(text): else: havemed = "" - alrgess_search = re.search( + allergies_search = re.search( r"List any allergies:\n*([0-9A-Za-z\n\s,.\/]+)\n\n", text ) - if alrgess_search is not None: - alrgess_search = alrgess_search.groups() - alrgess = str(alrgess_search[0]) - alrg1 = alrgess.split("\n\n") - tempalrg = alrg1[0] - alrg = str(tempalrg) + if allergies_search is not None: + allergies_search = allergies_search.groups() + allergies = str(allergies_search[0]) + alrg1 = allergies.split("\n\n") + temp_alrg = alrg1[0] + alrg = str(temp_alrg) alrg.replace("\n", " ") alrg = alrg.strip() else: alrg = "" - madicationess_search = re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) # noqa + madication_search = re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) # noqa mad = re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*Create*", text) # noqa mad2 = re.search(r"Expiry Date:\n*[a-zA-Z0-9, ]+\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*€}", text) # noqa mad3 = re.search(r"List any medication taken regularly:\n*([0-9A-Za-z\n\n\s,. \/\:]+)\n*", text) # noqa @@ -221,10 +221,10 @@ def extract_details(text): mad = mad.groups() mad = str(mad[0]) madication = mad.strip() - elif madicationess_search is not None: - madicationess_search = madicationess_search.groups() - madicationess = str(madicationess_search[0]) - madication = madicationess.strip() + elif madication_search is not None: + madication_search = madication_search.groups() + madication_temp = str(madication_search[0]) + madication = madication_temp.strip() elif mad2 is not None: mad2 = mad2.groups() mad2 = str(mad2[0]) @@ -260,7 +260,7 @@ def extract_details(text): ), ("Emergency Information", [ - ("Name", ename), + ("Name", emergency_name), ("Address", emr_addr), ("home phone", home_phone), ("work phone", work) diff --git a/api/image_utils/segment.py b/api/image_utils/segment.py index b59a376..178d8fa 100644 --- a/api/image_utils/segment.py +++ b/api/image_utils/segment.py @@ -1,35 +1,32 @@ from cv2 import cv2 import numpy as np + + def get_lines(img): """ - returns a list of numpy ndarrays containing line segments extracted from the image + returns a list of numpy ndarrays containing line segments extracted from the image # noqa """ lines = [] - - #pre-processing image + # pre-processing image img = cv2.cvtColor(np.array(img), cv2.COLOR_RGB2BGR) gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) - th, threshed = cv2.threshold(gray, 127, 255, cv2.THRESH_BINARY_INV|cv2.THRESH_OTSU) - - #finding lines - hist = cv2.reduce(threshed,1, cv2.REDUCE_AVG).reshape(-1) + th, threshed = cv2.threshold(gray, 127, 255, cv2.THRESH_BINARY_INV | cv2.THRESH_OTSU) # noqa + + # finding lines + hist = cv2.reduce(threshed, 1, cv2.REDUCE_AVG).reshape(-1) th = 1 H = img.shape[0] - uppers = [y for y in range(H-1) if hist[y]<=th and hist[y+1]>th] - lowers = [y for y in range(H-1) if hist[y]>th and hist[y+1]<=th] + uppers = [y for y in range(H-1) if hist[y] <= th and hist[y+1] > th] + lowers = [y for y in range(H-1) if hist[y] > th and hist[y+1] <= th] - #storing image line by line in a list + # storing image line by line in a list threshed = cv2.bitwise_not(threshed) min_height = 40 max_height = 100 - for s,e in zip(uppers[:-1], lowers[1:]): + for s, e in zip(uppers[:-1], lowers[1:]): if e-s > min_height and e-s < max_height: - temp_img = cv2.copyMakeBorder((threshed[s-5:e+5]), 50, 50, 0, 0,\ - cv2.BORDER_CONSTANT, None,\ - (255, 255, 255)) + temp_img = cv2.copyMakeBorder((threshed[s-5:e+5]), 50, 50, 0, 0, cv2.BORDER_CONSTANT, None, (255, 255, 255)) # noqa lines.append(temp_img) - - return lines From 2cef0a8f96ddab1b72d10b574db104722cc1ebba Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 15:56:43 +0530 Subject: [PATCH 11/33] Modified: gitignore changed --- frontend/build/build.js | 41 ++++++++ frontend/build/check-versions.js | 54 +++++++++++ frontend/build/logo.png | Bin 0 -> 6849 bytes frontend/build/utils.js | 101 +++++++++++++++++++ frontend/build/vue-loader.conf.js | 22 +++++ frontend/build/webpack.base.conf.js | 82 ++++++++++++++++ frontend/build/webpack.dev.conf.js | 95 ++++++++++++++++++ frontend/build/webpack.prod.conf.js | 145 ++++++++++++++++++++++++++++ 8 files changed, 540 insertions(+) create mode 100644 frontend/build/build.js create mode 100644 frontend/build/check-versions.js create mode 100644 frontend/build/logo.png create mode 100644 frontend/build/utils.js create mode 100644 frontend/build/vue-loader.conf.js create mode 100644 frontend/build/webpack.base.conf.js create mode 100644 frontend/build/webpack.dev.conf.js create mode 100644 frontend/build/webpack.prod.conf.js diff --git a/frontend/build/build.js b/frontend/build/build.js new file mode 100644 index 0000000..8f2ad8a --- /dev/null +++ b/frontend/build/build.js @@ -0,0 +1,41 @@ +'use strict' +require('./check-versions')() + +process.env.NODE_ENV = 'production' + +const ora = require('ora') +const rm = require('rimraf') +const path = require('path') +const chalk = require('chalk') +const webpack = require('webpack') +const config = require('../config') +const webpackConfig = require('./webpack.prod.conf') + +const spinner = ora('building for production...') +spinner.start() + +rm(path.join(config.build.assetsRoot, config.build.assetsSubDirectory), err => { + if (err) throw err + webpack(webpackConfig, (err, stats) => { + spinner.stop() + if (err) throw err + process.stdout.write(stats.toString({ + colors: true, + modules: false, + children: false, // If you are using ts-loader, setting this to true will make TypeScript errors show up during build. + chunks: false, + chunkModules: false + }) + '\n\n') + + if (stats.hasErrors()) { + console.log(chalk.red(' Build failed with errors.\n')) + process.exit(1) + } + + console.log(chalk.cyan(' Build complete.\n')) + console.log(chalk.yellow( + ' Tip: built files are meant to be served over an HTTP server.\n' + + ' Opening index.html over file:// won\'t work.\n' + )) + }) +}) diff --git a/frontend/build/check-versions.js b/frontend/build/check-versions.js new file mode 100644 index 0000000..3ef972a --- /dev/null +++ b/frontend/build/check-versions.js @@ -0,0 +1,54 @@ +'use strict' +const chalk = require('chalk') +const semver = require('semver') +const packageConfig = require('../package.json') +const shell = require('shelljs') + +function exec (cmd) { + return require('child_process').execSync(cmd).toString().trim() +} + +const versionRequirements = [ + { + name: 'node', + currentVersion: semver.clean(process.version), + versionRequirement: packageConfig.engines.node + } +] + +if (shell.which('npm')) { + versionRequirements.push({ + name: 'npm', + currentVersion: exec('npm --version'), + versionRequirement: packageConfig.engines.npm + }) +} + +module.exports = function () { + const warnings = [] + + for (let i = 0; i < versionRequirements.length; i++) { + const mod = versionRequirements[i] + + if (!semver.satisfies(mod.currentVersion, mod.versionRequirement)) { + warnings.push(mod.name + ': ' + + chalk.red(mod.currentVersion) + ' should be ' + + chalk.green(mod.versionRequirement) + ) + } + } + + if (warnings.length) { + console.log('') + console.log(chalk.yellow('To use this template, you must update following to modules:')) + console.log() + + for (let i = 0; i < warnings.length; i++) { + const warning = warnings[i] + console.log(' ' + warning) + } + + console.log() + process.exit(1) + } +} diff --git a/frontend/build/logo.png b/frontend/build/logo.png new file mode 100644 index 0000000000000000000000000000000000000000..f3d2503fc2a44b5053b0837ebea6e87a2d339a43 GIT binary patch literal 6849 zcmaKRcUV(fvo}bjDT-7nLI_nlK}sT_69H+`qzVWDA|yaU?}j417wLi^B1KB1SLsC& zL0ag7$U(XW5YR7p&Ux?sP$d4lvMt8C^+TcQu4F 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b/frontend/build/vue-loader.conf.js new file mode 100644 index 0000000..33ed58b --- /dev/null +++ b/frontend/build/vue-loader.conf.js @@ -0,0 +1,22 @@ +'use strict' +const utils = require('./utils') +const config = require('../config') +const isProduction = process.env.NODE_ENV === 'production' +const sourceMapEnabled = isProduction + ? config.build.productionSourceMap + : config.dev.cssSourceMap + +module.exports = { + loaders: utils.cssLoaders({ + sourceMap: sourceMapEnabled, + extract: isProduction + }), + cssSourceMap: sourceMapEnabled, + cacheBusting: config.dev.cacheBusting, + transformToRequire: { + video: ['src', 'poster'], + source: 'src', + img: 'src', + image: 'xlink:href' + } +} diff --git a/frontend/build/webpack.base.conf.js b/frontend/build/webpack.base.conf.js new file mode 100644 index 0000000..a07e683 --- /dev/null +++ b/frontend/build/webpack.base.conf.js @@ -0,0 +1,82 @@ +'use strict' +const path = require('path') +const utils = require('./utils') +const config = require('../config') +const vueLoaderConfig = require('./vue-loader.conf') + +function resolve (dir) { + return path.join(__dirname, '..', dir) +} + + + +module.exports = { + context: path.resolve(__dirname, '../'), + entry: { + app: './src/main.js' + }, + output: { + path: config.build.assetsRoot, + filename: '[name].js', + publicPath: process.env.NODE_ENV === 'production' + ? config.build.assetsPublicPath + : config.dev.assetsPublicPath + }, + resolve: { + extensions: ['.js', '.vue', '.json'], + alias: { + 'vue$': 'vue/dist/vue.esm.js', + '@': resolve('src'), + } + }, + module: { + rules: [ + { + test: /\.vue$/, + loader: 'vue-loader', + options: vueLoaderConfig + }, + { + test: /\.js$/, + loader: 'babel-loader', + include: [resolve('src'), resolve('test'), resolve('node_modules/webpack-dev-server/client')] + }, + { + test: /\.(png|jpe?g|gif|svg)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('img/[name].[hash:7].[ext]') + } + }, + { + test: /\.(mp4|webm|ogg|mp3|wav|flac|aac)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('media/[name].[hash:7].[ext]') + } + }, + { + test: /\.(woff2?|eot|ttf|otf)(\?.*)?$/, + loader: 'url-loader', + options: { + limit: 10000, + name: utils.assetsPath('fonts/[name].[hash:7].[ext]') + } + } + ] + }, + node: { + // prevent webpack from injecting useless setImmediate polyfill because Vue + // source contains it (although only uses it if it's native). + setImmediate: false, + // prevent webpack from injecting mocks to Node native modules + // that does not make sense for the client + dgram: 'empty', + fs: 'empty', + net: 'empty', + tls: 'empty', + child_process: 'empty' + } +} diff --git a/frontend/build/webpack.dev.conf.js b/frontend/build/webpack.dev.conf.js new file mode 100644 index 0000000..070ae22 --- /dev/null +++ b/frontend/build/webpack.dev.conf.js @@ -0,0 +1,95 @@ +'use strict' +const utils = require('./utils') +const webpack = require('webpack') +const config = require('../config') +const merge = require('webpack-merge') +const path = require('path') +const baseWebpackConfig = require('./webpack.base.conf') +const CopyWebpackPlugin = require('copy-webpack-plugin') +const HtmlWebpackPlugin = require('html-webpack-plugin') +const FriendlyErrorsPlugin = require('friendly-errors-webpack-plugin') +const portfinder = require('portfinder') + +const HOST = process.env.HOST +const PORT = process.env.PORT && Number(process.env.PORT) + +const devWebpackConfig = merge(baseWebpackConfig, { + module: { + rules: utils.styleLoaders({ sourceMap: config.dev.cssSourceMap, usePostCSS: true }) + }, + // cheap-module-eval-source-map is faster for development + devtool: config.dev.devtool, + + // these devServer options should be customized in /config/index.js + devServer: { + clientLogLevel: 'warning', + historyApiFallback: { + rewrites: [ + { from: /.*/, to: path.posix.join(config.dev.assetsPublicPath, 'index.html') }, + ], + }, + hot: true, + contentBase: false, // since we use CopyWebpackPlugin. + compress: true, + host: HOST || config.dev.host, + port: PORT || config.dev.port, + open: config.dev.autoOpenBrowser, + overlay: config.dev.errorOverlay + ? { warnings: false, errors: true } + : false, + publicPath: config.dev.assetsPublicPath, + proxy: config.dev.proxyTable, + quiet: true, // necessary for FriendlyErrorsPlugin + watchOptions: { + poll: config.dev.poll, + } + }, + plugins: [ + new webpack.DefinePlugin({ + 'process.env': require('../config/dev.env') + }), + new webpack.HotModuleReplacementPlugin(), + new webpack.NamedModulesPlugin(), // HMR shows correct file names in console on update. + new webpack.NoEmitOnErrorsPlugin(), + // https://github.com/ampedandwired/html-webpack-plugin + new HtmlWebpackPlugin({ + filename: 'index.html', + template: 'index.html', + inject: true + }), + // copy custom static assets + new CopyWebpackPlugin([ + { + from: path.resolve(__dirname, '../static'), + to: config.dev.assetsSubDirectory, + ignore: ['.*'] + } + ]) + ] +}) + +module.exports = new Promise((resolve, reject) => { + portfinder.basePort = process.env.PORT || config.dev.port + portfinder.getPort((err, port) => { + if (err) { + reject(err) + } else { + // publish the new Port, necessary for e2e tests + process.env.PORT = port + // add port to devServer config + devWebpackConfig.devServer.port = port + + // Add FriendlyErrorsPlugin + devWebpackConfig.plugins.push(new FriendlyErrorsPlugin({ + compilationSuccessInfo: { + messages: [`Your application is running here: http://${devWebpackConfig.devServer.host}:${port}`], + }, + onErrors: config.dev.notifyOnErrors + ? utils.createNotifierCallback() + : undefined + })) + + resolve(devWebpackConfig) + } + }) +}) diff --git a/frontend/build/webpack.prod.conf.js b/frontend/build/webpack.prod.conf.js new file mode 100644 index 0000000..d9f99f6 --- /dev/null +++ b/frontend/build/webpack.prod.conf.js @@ -0,0 +1,145 @@ +'use strict' +const path = require('path') +const utils = require('./utils') +const webpack = require('webpack') +const config = require('../config') +const merge = require('webpack-merge') +const baseWebpackConfig = require('./webpack.base.conf') +const CopyWebpackPlugin = require('copy-webpack-plugin') +const HtmlWebpackPlugin = require('html-webpack-plugin') +const ExtractTextPlugin = require('extract-text-webpack-plugin') +const OptimizeCSSPlugin = require('optimize-css-assets-webpack-plugin') +const UglifyJsPlugin = require('uglifyjs-webpack-plugin') + +const env = require('../config/prod.env') + +const webpackConfig = merge(baseWebpackConfig, { + module: { + rules: utils.styleLoaders({ + sourceMap: config.build.productionSourceMap, + extract: true, + usePostCSS: true + }) + }, + devtool: config.build.productionSourceMap ? config.build.devtool : false, + output: { + path: config.build.assetsRoot, + filename: utils.assetsPath('js/[name].[chunkhash].js'), + chunkFilename: utils.assetsPath('js/[id].[chunkhash].js') + }, + plugins: [ + // http://vuejs.github.io/vue-loader/en/workflow/production.html + new webpack.DefinePlugin({ + 'process.env': env + }), + new UglifyJsPlugin({ + uglifyOptions: { + compress: { + warnings: false + } + }, + sourceMap: config.build.productionSourceMap, + parallel: true + }), + // extract css into its own file + new ExtractTextPlugin({ + filename: utils.assetsPath('css/[name].[contenthash].css'), + // Setting the following option to `false` will not extract CSS from codesplit chunks. + // Their CSS will instead be inserted dynamically with style-loader when the codesplit chunk has been loaded by webpack. + // It's currently set to `true` because we are seeing that sourcemaps are included in the codesplit bundle as well when it's `false`, + // increasing file size: https://github.com/vuejs-templates/webpack/issues/1110 + allChunks: true, + }), + // Compress extracted CSS. We are using this plugin so that possible + // duplicated CSS from different components can be deduped. + new OptimizeCSSPlugin({ + cssProcessorOptions: config.build.productionSourceMap + ? { safe: true, map: { inline: false } } + : { safe: true } + }), + // generate dist index.html with correct asset hash for caching. + // you can customize output by editing /index.html + // see https://github.com/ampedandwired/html-webpack-plugin + new HtmlWebpackPlugin({ + filename: config.build.index, + template: 'index.html', + inject: true, + minify: { + removeComments: true, + collapseWhitespace: true, + removeAttributeQuotes: true + // more options: + // https://github.com/kangax/html-minifier#options-quick-reference + }, + // necessary to consistently work with multiple chunks via CommonsChunkPlugin + chunksSortMode: 'dependency' + }), + // keep module.id stable when vendor modules does not change + new webpack.HashedModuleIdsPlugin(), + // enable scope hoisting + new webpack.optimize.ModuleConcatenationPlugin(), + // split vendor js into its own file + new webpack.optimize.CommonsChunkPlugin({ + name: 'vendor', + minChunks (module) { + // any required modules inside node_modules are extracted to vendor + return ( + module.resource && + /\.js$/.test(module.resource) && + module.resource.indexOf( + path.join(__dirname, '../node_modules') + ) === 0 + ) + } + }), + // extract webpack runtime and module manifest to its own file in order to + // prevent vendor hash from being updated whenever app bundle is updated + new webpack.optimize.CommonsChunkPlugin({ + name: 'manifest', + minChunks: Infinity + }), + // This instance extracts shared chunks from code splitted chunks and bundles them + // in a separate chunk, similar to the vendor chunk + // see: https://webpack.js.org/plugins/commons-chunk-plugin/#extra-async-commons-chunk + new webpack.optimize.CommonsChunkPlugin({ + name: 'app', + async: 'vendor-async', + children: true, + minChunks: 3 + }), + + // copy custom static assets + new CopyWebpackPlugin([ + { + from: path.resolve(__dirname, '../static'), + to: config.build.assetsSubDirectory, + ignore: ['.*'] + } + ]) + ] +}) + +if (config.build.productionGzip) { + const CompressionWebpackPlugin = require('compression-webpack-plugin') + + webpackConfig.plugins.push( + new CompressionWebpackPlugin({ + asset: '[path].gz[query]', + algorithm: 'gzip', + test: new RegExp( + '\\.(' + + config.build.productionGzipExtensions.join('|') + + ')$' + ), + threshold: 10240, + minRatio: 0.8 + }) + ) +} + +if (config.build.bundleAnalyzerReport) { + const BundleAnalyzerPlugin = require('webpack-bundle-analyzer').BundleAnalyzerPlugin + webpackConfig.plugins.push(new BundleAnalyzerPlugin()) +} + +module.exports = webpackConfig From e2c642f71cd0ed7b67f1049c783dbe8e0fb8dbc3 Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 16:04:06 +0530 Subject: [PATCH 12/33] --- api/docker-compose.yml.example | 18 - frontend/package-lock.json | 2021 ++++++++++++++------------------ frontend/package.json | 5 +- 3 files changed, 886 insertions(+), 1158 deletions(-) delete mode 100644 api/docker-compose.yml.example diff --git a/api/docker-compose.yml.example b/api/docker-compose.yml.example deleted file mode 100644 index d0ed2bd..0000000 --- a/api/docker-compose.yml.example +++ /dev/null @@ -1,18 +0,0 @@ -version: '3' - -services: - app: - container_name: ocr-api - build: . - volumes: - - './:/project/' - restart: always - web: - image: nginx - volumes: - - './nginx.conf:/etc/nginx/conf.d/default.conf' - ports: - - '5001:80' - links: - - app - restart: always diff --git a/frontend/package-lock.json b/frontend/package-lock.json index 0efbdae..2078aba 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -21,9 +21,9 @@ } }, "acorn": { - "version": "5.7.3", - "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.7.3.tgz", - "integrity": "sha512-T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==", + "version": "5.7.4", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.7.4.tgz", + "integrity": "sha512-1D++VG7BhrtvQpNbBzovKNc1FLGGEE/oGe7b9xJm/RFHMBeUaUGpluV9RLjZa47YFdPcDAenEYuq9pQPcMdLJg==", "dev": true }, "acorn-dynamic-import": { @@ -43,6 +43,12 @@ } } }, + "after": { + "version": "0.8.2", + "resolved": "https://registry.npmjs.org/after/-/after-0.8.2.tgz", + "integrity": "sha1-/ts5T58OAqqXaOcCvaI7UF+ufh8=", + "dev": true + }, "ajv": { "version": "5.5.2", "resolved": "https://registry.npmjs.org/ajv/-/ajv-5.5.2.tgz", @@ -78,12 +84,6 @@ "integrity": "sha1-l6ERlkmyEa0zaR2fn0hqjsn74KM=", "dev": true }, - "ansi-html": { - "version": "0.0.7", - "resolved": "https://registry.npmjs.org/ansi-html/-/ansi-html-0.0.7.tgz", - "integrity": "sha1-gTWEAhliqenm/QOflA0S9WynhZ4=", - "dev": true - }, "ansi-regex": { "version": "2.1.1", "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz", @@ -104,6 +104,7 @@ "resolved": "https://registry.npmjs.org/anymatch/-/anymatch-2.0.0.tgz", "integrity": "sha512-5teOsQWABXHHBFP9y3skS5P3d/WfWXpv3FUpy+LorMrNYaT9pI4oLMQX7jzQ2KklNpGpWHzdCXTDT2Y3XGlZBw==", "dev": true, + "optional": true, "requires": { "micromatch": "^3.1.4", "normalize-path": "^2.1.1" @@ -114,6 +115,7 @@ "resolved": "https://registry.npmjs.org/normalize-path/-/normalize-path-2.1.1.tgz", "integrity": "sha1-GrKLVW4Zg2Oowab35vogE3/mrtk=", "dev": true, + "optional": true, "requires": { "remove-trailing-separator": "^1.0.1" } @@ -139,25 +141,22 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz", "integrity": "sha1-1kYQdP6/7HHn4VI1dhoyml3HxSA=", - "dev": true + "dev": true, + "optional": true }, "arr-flatten": { "version": "1.1.0", "resolved": "https://registry.npmjs.org/arr-flatten/-/arr-flatten-1.1.0.tgz", "integrity": "sha512-L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg==", - "dev": true + "dev": true, + "optional": true }, "arr-union": { "version": "3.1.0", "resolved": "https://registry.npmjs.org/arr-union/-/arr-union-3.1.0.tgz", "integrity": "sha1-45sJrqne+Gao8gbiiK9jkZuuOcQ=", - "dev": true - }, - "array-find-index": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/array-find-index/-/array-find-index-1.0.2.tgz", - "integrity": "sha1-3wEKoSh+Fku9pvlyOwqWoexBh6E=", - "dev": true + "dev": true, + "optional": true }, "array-flatten": { "version": "1.1.1", @@ -165,16 +164,6 @@ "integrity": "sha1-ml9pkFGx5wczKPKgCJaLZOopVdI=", "dev": true }, - "array-includes": { - "version": "3.0.3", - "resolved": "https://registry.npmjs.org/array-includes/-/array-includes-3.0.3.tgz", - "integrity": "sha1-GEtI9i2S10UrsxsyMWXH+L0CJm0=", - "dev": true, - "requires": { - "define-properties": "^1.1.2", - "es-abstract": "^1.7.0" - } - }, "array-union": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/array-union/-/array-union-1.0.2.tgz", @@ -194,6 +183,13 @@ "version": "0.3.2", "resolved": "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz", "integrity": "sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg=", + "dev": true, + "optional": true + }, + "arraybuffer.slice": { + "version": "0.0.6", + "resolved": "https://registry.npmjs.org/arraybuffer.slice/-/arraybuffer.slice-0.0.6.tgz", + "integrity": "sha1-8zshWfBTKj8xB6JywMz70a0peco=", "dev": true }, "asn1.js": { @@ -238,7 +234,8 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/assign-symbols/-/assign-symbols-1.0.0.tgz", "integrity": "sha1-WWZ/QfrdTyDMvCu5a41Pf3jsA2c=", - "dev": true + "dev": true, + "optional": true }, "async": { "version": "2.6.3", @@ -253,7 +250,8 @@ "version": "1.0.3", "resolved": "https://registry.npmjs.org/async-each/-/async-each-1.0.3.tgz", "integrity": "sha512-z/WhQ5FPySLdvREByI2vZiTWwCnF0moMJ1hK9YQwDTHKh6I7/uSckMetoRGb5UBZPC1z0jlw+n/XCgjeH7y1AQ==", - "dev": true + "dev": true, + "optional": true }, "async-limiter": { "version": "1.0.1", @@ -273,7 +271,8 @@ "version": "2.1.2", "resolved": "https://registry.npmjs.org/atob/-/atob-2.1.2.tgz", "integrity": "sha512-Wm6ukoaOGJi/73p/cl2GvLjTI5JM1k/O14isD73YML8StrH/7/lRFgmg8nICZgD3bZZvjwCGxtMOD3wWNAu8cg==", - "dev": true + "dev": true, + "optional": true }, "autoprefixer": { "version": "7.2.6", @@ -290,35 +289,11 @@ } }, "axios": { - "version": "0.19.0", - "resolved": "https://registry.npmjs.org/axios/-/axios-0.19.0.tgz", - "integrity": "sha512-1uvKqKQta3KBxIz14F2v06AEHZ/dIoeKfbTRkK1E5oqjDnuEerLmYTgJB5AiQZHJcljpg1TuRzdjDR06qNk0DQ==", + "version": "0.21.1", + "resolved": "https://registry.npmjs.org/axios/-/axios-0.21.1.tgz", + "integrity": "sha512-dKQiRHxGD9PPRIUNIWvZhPTPpl1rf/OxTYKsqKUDjBwYylTvV7SjSHJb9ratfyzM6wCdLCOYLzs73qpg5c4iGA==", "requires": { - "follow-redirects": "1.5.10", - "is-buffer": "^2.0.2" - }, - "dependencies": { - "debug": { - "version": "3.1.0", - "resolved": 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"https://registry.npmjs.org/backo2/-/backo2-1.0.2.tgz", + "integrity": "sha1-MasayLEpNjRj41s+u2n038+6eUc=", + "dev": true + }, "balanced-match": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/balanced-match/-/balanced-match-1.0.0.tgz", @@ -1163,6 +1144,7 @@ "resolved": "https://registry.npmjs.org/base/-/base-0.11.2.tgz", "integrity": "sha512-5T6P4xPgpp0YDFvSWwEZ4NoE3aM4QBQXDzmVbraCkFj8zHM+mba8SyqB5DbZWyR7mYHo6Y7BdQo3MoA4m0TeQg==", "dev": true, + "optional": true, "requires": { "cache-base": "^1.0.1", "class-utils": "^0.3.5", @@ -1178,6 +1160,7 @@ "resolved": "https://registry.npmjs.org/define-property/-/define-property-1.0.0.tgz", "integrity": "sha1-dp66rz9KY6rTr56NMEybvnm/sOY=", "dev": true, + "optional": true, "requires": { "is-descriptor": "^1.0.0" } @@ -1187,6 +1170,7 @@ "resolved": "https://registry.npmjs.org/is-accessor-descriptor/-/is-accessor-descriptor-1.0.0.tgz", "integrity": 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"resolved": "https://registry.npmjs.org/caniuse-api/-/caniuse-api-1.6.1.tgz", @@ -1643,6 +1620,7 @@ "resolved": "https://registry.npmjs.org/chokidar/-/chokidar-2.1.8.tgz", "integrity": "sha512-ZmZUazfOzf0Nve7duiCKD23PFSCs4JPoYyccjUFF3aQkQadqBhfzhjkwBH2mNOG9cTBwhamM37EIsIkZw3nRgg==", "dev": true, + "optional": true, "requires": { "anymatch": "^2.0.0", "async-each": "^1.0.1", @@ -1715,6 +1693,7 @@ "resolved": "https://registry.npmjs.org/class-utils/-/class-utils-0.3.6.tgz", "integrity": "sha512-qOhPa/Fj7s6TY8H8esGu5QNpMMQxz79h+urzrNYN6mn+9BnxlDGf5QZ+XeCDsxSjPqsSR56XOZOJmpeurnLMeg==", "dev": true, + "optional": true, "requires": { "arr-union": "^3.1.0", "define-property": "^0.2.5", @@ -1727,6 +1706,7 @@ "resolved": "https://registry.npmjs.org/define-property/-/define-property-0.2.5.tgz", "integrity": "sha1-w1se+RjsPJkPmlvFe+BKrOxcgRY=", "dev": true, + "optional": true, "requires": { "is-descriptor": "^0.1.0" } @@ -1800,6 +1780,7 @@ "resolved": 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"resolved": "https://registry.npmjs.org/yargs/-/yargs-6.6.0.tgz", - "integrity": "sha1-eC7CHvQDNF+DCoCMo9UTr1YGUgg=", - "dev": true, - "requires": { - "camelcase": "^3.0.0", - "cliui": "^3.2.0", - "decamelize": "^1.1.1", - "get-caller-file": "^1.0.1", - "os-locale": "^1.4.0", - "read-pkg-up": "^1.0.1", - "require-directory": "^2.1.1", - "require-main-filename": "^1.0.1", - "set-blocking": "^2.0.0", - "string-width": "^1.0.2", - "which-module": "^1.0.0", - "y18n": "^3.2.1", - "yargs-parser": "^4.2.0" - } - }, - "yargs-parser": { - "version": "4.2.1", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-4.2.1.tgz", - "integrity": "sha1-KczqwNxPA8bIe0qfIX3RjJ90hxw=", - "dev": true, - "requires": { - "camelcase": "^3.0.0" - } } } }, @@ -11554,23 +11298,6 @@ "source-map": "~0.6.1" } }, - "websocket-driver": { - "version": "0.7.3", - "resolved": "https://registry.npmjs.org/websocket-driver/-/websocket-driver-0.7.3.tgz", - "integrity": "sha512-bpxWlvbbB459Mlipc5GBzzZwhoZgGEZLuqPaR0INBGnPAY1vdBX6hPnoFXiw+3yWxDuHyQjO2oXTMyS8A5haFg==", - "dev": true, - "requires": { - "http-parser-js": ">=0.4.0 <0.4.11", - "safe-buffer": ">=5.1.0", - "websocket-extensions": ">=0.1.1" - } - }, - "websocket-extensions": { - "version": "0.1.3", - "resolved": "https://registry.npmjs.org/websocket-extensions/-/websocket-extensions-0.1.3.tgz", - "integrity": "sha512-nqHUnMXmBzT0w570r2JpJxfiSD1IzoI+HGVdd3aZ0yNi3ngvQ4jv1dtHt5VGxfI2yj5yqImPhOK4vmIh2xMbGg==", - "dev": true - }, "whet.extend": { "version": "0.9.9", "resolved": "https://registry.npmjs.org/whet.extend/-/whet.extend-0.9.9.tgz", @@ -11661,6 +11388,18 @@ "safe-buffer": "~5.1.0" } }, + "wtf-8": { + "version": "1.0.0", + "resolved": "https://registry.npmjs.org/wtf-8/-/wtf-8-1.0.0.tgz", + "integrity": "sha1-OS2LotDxw00e4tYw8V0O+2jhBIo=", + "dev": true + }, + "xmlhttprequest-ssl": { + "version": "1.5.3", + "resolved": "https://registry.npmjs.org/xmlhttprequest-ssl/-/xmlhttprequest-ssl-1.5.3.tgz", + "integrity": "sha1-GFqIjATspGw+QHDZn3tJ3jUomS0=", + "dev": true + }, "xtend": { "version": "4.0.2", "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz", @@ -11772,6 +11511,12 @@ "dev": true } } + }, + "yeast": { + "version": "0.1.2", + "resolved": "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz", + "integrity": "sha1-AI4G2AlDIMNy28L47XagymyKxBk=", + "dev": true } } } diff --git a/frontend/package.json b/frontend/package.json index b7c755a..e8aed9c 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -10,7 +10,7 @@ "build": "node build/build.js" }, "dependencies": { - "axios": "^0.19.0", + "axios": "^0.21.1", "element-ui": "^2.13.0", "vue": "^2.5.2", "vue-router": "^3.0.1", @@ -48,9 +48,10 @@ "vue-loader": "^13.3.0", "vue-style-loader": "^3.0.1", "vue-template-compiler": "^2.5.2", + "vue-webpack": "^1.10.2", "webpack": "^3.6.0", "webpack-bundle-analyzer": "^2.9.0", - "webpack-dev-server": "^2.9.1", + "webpack-dev-server": "^1.9.0", "webpack-merge": "^4.1.0" }, "engines": { From 24678dfdb55e2367a00f92c7ada6fee937b05b9a Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 16:07:46 +0530 Subject: [PATCH 13/33] --allow-empty-message --- .gitignore | 3 --- frontend/.babelrc | 13 +++++++++++++ 2 files changed, 13 insertions(+), 3 deletions(-) create mode 100644 frontend/.babelrc diff --git a/.gitignore b/.gitignore index f8a92eb..b6e4761 100644 --- a/.gitignore +++ b/.gitignore @@ -127,6 +127,3 @@ dmypy.json # Pyre type checker .pyre/ -frontend/.editorconfig -frontend/.babelrc -frontend/.postcssrc.js diff --git a/frontend/.babelrc b/frontend/.babelrc new file mode 100644 index 0000000..9a689a1 --- /dev/null +++ b/frontend/.babelrc @@ -0,0 +1,13 @@ +{ + "presets": [ + ["env", { + "modules": false, + "targets": { + "browsers": ["> 1%", "last 2 versions", "not ie <= 8"] + } + }], + "stage-2" + ], + "plugins": ["transform-vue-jsx", "transform-runtime"] + } + \ No newline at end of file From 96e10c44b8e0e7334c9d8f63d05d8945c053cf7a Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 16:08:39 +0530 Subject: [PATCH 14/33] --allow-empty-message --- .gitignore | 5 +---- frontend/.babelrc | 12 ++++++++++++ frontend/.editorconfig | 9 +++++++++ frontend/.postcssrc.js | 10 ++++++++++ 4 files changed, 32 insertions(+), 4 deletions(-) create mode 100644 frontend/.babelrc create mode 100644 frontend/.editorconfig create mode 100644 frontend/.postcssrc.js diff --git a/.gitignore b/.gitignore index f8a92eb..08064e8 100644 --- a/.gitignore +++ b/.gitignore @@ -8,7 +8,6 @@ __pycache__/ # Distribution / packaging .Python -build/ develop-eggs/ dist/ downloads/ @@ -127,6 +126,4 @@ dmypy.json # Pyre type checker .pyre/ -frontend/.editorconfig -frontend/.babelrc -frontend/.postcssrc.js + diff --git a/frontend/.babelrc b/frontend/.babelrc new file mode 100644 index 0000000..3a280ba --- /dev/null +++ b/frontend/.babelrc @@ -0,0 +1,12 @@ +{ + "presets": [ + ["env", { + "modules": false, + "targets": { + "browsers": ["> 1%", "last 2 versions", "not ie <= 8"] + } + }], + "stage-2" + ], + "plugins": ["transform-vue-jsx", "transform-runtime"] +} diff --git a/frontend/.editorconfig b/frontend/.editorconfig new file mode 100644 index 0000000..9d08a1a --- /dev/null +++ b/frontend/.editorconfig @@ -0,0 +1,9 @@ +root = true + +[*] +charset = utf-8 +indent_style = space +indent_size = 2 +end_of_line = lf +insert_final_newline = true +trim_trailing_whitespace = true diff --git a/frontend/.postcssrc.js b/frontend/.postcssrc.js new file mode 100644 index 0000000..eee3e92 --- /dev/null +++ b/frontend/.postcssrc.js @@ -0,0 +1,10 @@ +// https://github.com/michael-ciniawsky/postcss-load-config + +module.exports = { + "plugins": { + "postcss-import": {}, + "postcss-url": {}, + // to edit target browsers: use "browserslist" field in package.json + "autoprefixer": {} + } +} From 12056fe51d261f3a08b00f248258a04a475a3afe Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Fri, 12 Feb 2021 16:12:12 +0530 Subject: [PATCH 15/33] Revert "reverted" This reverts commit e2c642f71cd0ed7b67f1049c783dbe8e0fb8dbc3. --- api/docker-compose.yml.example | 18 + frontend/package-lock.json | 2033 ++++++++++++++++++-------------- frontend/package.json | 5 +- 3 files changed, 1164 insertions(+), 892 deletions(-) create mode 100644 api/docker-compose.yml.example diff --git a/api/docker-compose.yml.example b/api/docker-compose.yml.example new file mode 100644 index 0000000..d0ed2bd --- /dev/null +++ b/api/docker-compose.yml.example @@ -0,0 +1,18 @@ +version: '3' + +services: + app: + container_name: ocr-api + build: . + volumes: + - './:/project/' + restart: always + web: + image: nginx + volumes: + - './nginx.conf:/etc/nginx/conf.d/default.conf' + ports: + - '5001:80' + links: + - app + restart: always diff --git a/frontend/package-lock.json b/frontend/package-lock.json index 2078aba..0efbdae 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -21,9 +21,9 @@ } }, "acorn": { - "version": "5.7.4", - "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.7.4.tgz", - "integrity": "sha512-1D++VG7BhrtvQpNbBzovKNc1FLGGEE/oGe7b9xJm/RFHMBeUaUGpluV9RLjZa47YFdPcDAenEYuq9pQPcMdLJg==", + "version": "5.7.3", + "resolved": "https://registry.npmjs.org/acorn/-/acorn-5.7.3.tgz", + "integrity": "sha512-T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==", "dev": true }, "acorn-dynamic-import": { @@ -43,12 +43,6 @@ } } }, - "after": { - "version": "0.8.2", - "resolved": "https://registry.npmjs.org/after/-/after-0.8.2.tgz", - "integrity": "sha1-/ts5T58OAqqXaOcCvaI7UF+ufh8=", - "dev": true - }, "ajv": { "version": "5.5.2", "resolved": "https://registry.npmjs.org/ajv/-/ajv-5.5.2.tgz", @@ -84,6 +78,12 @@ "integrity": "sha1-l6ERlkmyEa0zaR2fn0hqjsn74KM=", "dev": true }, + "ansi-html": { + "version": "0.0.7", + "resolved": "https://registry.npmjs.org/ansi-html/-/ansi-html-0.0.7.tgz", + "integrity": "sha1-gTWEAhliqenm/QOflA0S9WynhZ4=", + "dev": true + }, "ansi-regex": { "version": "2.1.1", "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz", @@ -104,7 +104,6 @@ "resolved": "https://registry.npmjs.org/anymatch/-/anymatch-2.0.0.tgz", "integrity": "sha512-5teOsQWABXHHBFP9y3skS5P3d/WfWXpv3FUpy+LorMrNYaT9pI4oLMQX7jzQ2KklNpGpWHzdCXTDT2Y3XGlZBw==", "dev": true, - "optional": true, "requires": { "micromatch": "^3.1.4", "normalize-path": "^2.1.1" @@ -115,7 +114,6 @@ "resolved": "https://registry.npmjs.org/normalize-path/-/normalize-path-2.1.1.tgz", "integrity": "sha1-GrKLVW4Zg2Oowab35vogE3/mrtk=", "dev": true, - "optional": true, "requires": { "remove-trailing-separator": "^1.0.1" } @@ -141,22 +139,25 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz", "integrity": "sha1-1kYQdP6/7HHn4VI1dhoyml3HxSA=", - "dev": true, - "optional": true + "dev": true }, "arr-flatten": { "version": "1.1.0", "resolved": "https://registry.npmjs.org/arr-flatten/-/arr-flatten-1.1.0.tgz", "integrity": "sha512-L3hKV5R/p5o81R7O02IGnwpDmkp6E982XhtbuwSe3O4qOtMMMtodicASA1Cny2U+aCXcNpml+m4dPsvsJ3jatg==", - "dev": true, - "optional": true + "dev": true }, "arr-union": { "version": "3.1.0", "resolved": "https://registry.npmjs.org/arr-union/-/arr-union-3.1.0.tgz", "integrity": "sha1-45sJrqne+Gao8gbiiK9jkZuuOcQ=", - "dev": true, - "optional": true + "dev": true + }, + "array-find-index": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/array-find-index/-/array-find-index-1.0.2.tgz", + "integrity": "sha1-3wEKoSh+Fku9pvlyOwqWoexBh6E=", + "dev": true }, "array-flatten": { "version": "1.1.1", @@ -164,6 +165,16 @@ "integrity": "sha1-ml9pkFGx5wczKPKgCJaLZOopVdI=", "dev": true }, + "array-includes": { + "version": "3.0.3", + "resolved": "https://registry.npmjs.org/array-includes/-/array-includes-3.0.3.tgz", + "integrity": "sha1-GEtI9i2S10UrsxsyMWXH+L0CJm0=", + "dev": true, + "requires": { + "define-properties": "^1.1.2", + "es-abstract": "^1.7.0" + } + }, "array-union": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/array-union/-/array-union-1.0.2.tgz", @@ -183,13 +194,6 @@ "version": "0.3.2", "resolved": "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz", "integrity": "sha1-qJS3XUvE9s1nnvMkSp/Y9Gri1Cg=", - "dev": true, - "optional": true - }, - "arraybuffer.slice": { - "version": "0.0.6", - "resolved": "https://registry.npmjs.org/arraybuffer.slice/-/arraybuffer.slice-0.0.6.tgz", - "integrity": "sha1-8zshWfBTKj8xB6JywMz70a0peco=", "dev": true }, "asn1.js": { @@ -234,8 +238,7 @@ "version": "1.0.0", "resolved": "https://registry.npmjs.org/assign-symbols/-/assign-symbols-1.0.0.tgz", "integrity": "sha1-WWZ/QfrdTyDMvCu5a41Pf3jsA2c=", - "dev": true, - "optional": true + "dev": true }, "async": { "version": "2.6.3", @@ -250,8 +253,7 @@ "version": "1.0.3", "resolved": 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b/frontend/package.json @@ -10,7 +10,7 @@ "build": "node build/build.js" }, "dependencies": { - "axios": "^0.21.1", + "axios": "^0.19.0", "element-ui": "^2.13.0", "vue": "^2.5.2", "vue-router": "^3.0.1", @@ -48,10 +48,9 @@ "vue-loader": "^13.3.0", "vue-style-loader": "^3.0.1", "vue-template-compiler": "^2.5.2", - "vue-webpack": "^1.10.2", "webpack": "^3.6.0", "webpack-bundle-analyzer": "^2.9.0", - "webpack-dev-server": "^1.9.0", + "webpack-dev-server": "^2.9.1", "webpack-merge": "^4.1.0" }, "engines": { From a7266dc30fba71321eca48953285b6e5346111a7 Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Mon, 15 Feb 2021 08:57:07 +0530 Subject: [PATCH 16/33] Added : Readme File --- README.md | 45 ++++++++++++++++++++++++++++++++++++++ frontend/package-lock.json | 26 +++++++++++++++++----- 2 files changed, 65 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 402b639..9f37314 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,47 @@ # python-simple-ocr-project A simple OCR Project using python with frontend in VueJS + + + +# Overview +Repository for Medical-OCR. + +# Folder Structure +1. **api** : backend for performing ocr + + 1.1. **extaractor** : performing format specific field extractions on text + + 1.2. **image_utils** : extracting text from every images of pdf + + 1.3. **parser** : parsing pdf pages into images for image processing use + + 1.4. **uploads** : just temperory folder for storing pdf files for temperory + +2. **frontend**: frontend for request response + + -having only one component for uploading pdf file and getting response from docker and printing it on the screen. + +# Setup Instructions For Local Environment + +1. Install git bash or any other git client where you can run git & unix commands. + +2. Install Docker CE. ([Setup instructions](https://docs.docker.com/install/linux/docker-ce/ubuntu/)) + +3. Install docker-compose. ([Setup instructions](https://docs.docker.com/compose/install/)) + +4. Clone the project. (`https://github.com/beladiyadarshan/python-simple-ocr-project.git`) + +5. Copy docker-compose.yml.example and save it as docker-compose.yml. + +6. For Running Backend api +``` + cd api(change your directory to api) + docker-compose up --build +``` +7.For Running frontend +``` + cd ../frontend(change your directory to frontend) + npm install (install all required node packages) + npm run dev (for running the frontend) +``` + \ No newline at end of file diff --git a/frontend/package-lock.json b/frontend/package-lock.json index 55f1bc3..c1d2a9b 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -1196,7 +1196,8 @@ }, "kind-of": { "version": "6.0.2", - "resolved": "", + "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz", + "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==", "dev": true } } @@ -3287,8 +3288,12 @@ }, "dot-prop": { "version": "4.2.0", - "resolved": "", - "dev": true + "resolved": "https://registry.npmjs.org/dot-prop/-/dot-prop-4.2.0.tgz", + "integrity": "sha512-tUMXrxlExSW6U2EXiiKGSBVdYgtV8qlHL+C10TsW4PURY/ic+eaysnSkwB4kA/mBlCyy/IKDJ+Lc3wbWeaXtuQ==", + "dev": true, + "requires": { + "is-obj": "^1.0.0" + } }, "dropzone": { "version": "5.5.1", @@ -3834,7 +3839,8 @@ }, "kind-of": { "version": "6.0.2", - "resolved": "", + "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz", + "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==", "dev": true } } @@ -5397,6 +5403,12 @@ "kind-of": "^3.0.2" } }, + "is-obj": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/is-obj/-/is-obj-1.0.1.tgz", + "integrity": "sha1-PkcprB9f3gJc19g6iW2rn09n2w8=", + "dev": true + }, "is-path-cwd": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/is-path-cwd/-/is-path-cwd-1.0.0.tgz", @@ -10075,7 +10087,8 @@ }, "kind-of": { "version": "6.0.2", - "resolved": "", + "resolved": "https://registry.npmjs.org/kind-of/-/kind-of-6.0.2.tgz", + "integrity": "sha512-s5kLOcnH0XqDO+FvuaLX8DDjZ18CGFk7VygH40QoKPUQhW4e2rvM0rwUq0t8IQDOwYSeLK01U90OjzBTme2QqA==", "dev": true } } @@ -11101,7 +11114,8 @@ }, "minimist": { "version": "1.2.0", - "resolved": "", + "resolved": "https://registry.npmjs.org/minimist/-/minimist-1.2.0.tgz", + "integrity": "sha1-o1AIsg9BOD7sH7kU9M1d95omQoQ=", "dev": true }, "parse-json": { From e16082988620fe05bbf61fe6ca19e8c5bf528e8c Mon Sep 17 00:00:00 2001 From: d_p_beladiya Date: Tue, 16 Feb 2021 18:18:19 +0530 Subject: [PATCH 17/33] RFC: Cleaned code --- api/extractor/extract.py | 23 +---------- api/extractor/format2.py | 27 ------------- api/extractor/format3.py | 54 ------------------------- api/extractor/format4.py | 64 ------------------------------ api/image_utils/image_to_string.py | 16 -------- api/image_utils/segment.py | 32 --------------- 6 files changed, 1 insertion(+), 215 deletions(-) delete mode 100644 api/extractor/format2.py delete mode 100644 api/extractor/format3.py delete mode 100644 api/extractor/format4.py delete mode 100644 api/image_utils/segment.py diff --git a/api/extractor/extract.py b/api/extractor/extract.py index 6a342f6..2ad1a9d 100644 --- a/api/extractor/extract.py +++ b/api/extractor/extract.py @@ -1,35 +1,14 @@ import cv2 from flask import current_app as app -from extractor import format2 -from extractor import format3 -from extractor import format4 from extractor import format1 from image_utils.image_to_string import from_image_to_string import numpy as np functions = { - 'format1': format1, - 'format2': format2, - 'format3': format3, - 'format4': format4 + 'format1': format1 } -def clarify_text(img): - img2 = img.copy().astype('uint8') - disp_img = cv2.cvtColor(img2, cv2.COLOR_BGR2GRAY).astype('uint8') - # blur = cv2.GaussianBlur(disp_img, (3, 3), 0).astype('uint8') - ret3, th3 = cv2.threshold(disp_img, 0, 255, cv2.THRESH_BINARY+cv2.THRESH_OTSU) # noqa - disp_img = cv2.medianBlur(th3, 3) - disp_img = cv2.resize(disp_img, None, fx=5, fy=5, interpolation=cv2.INTER_CUBIC) # noqa - kernel = np.ones((3, 3), np.uint8) - dilated = cv2.dilate(th3, kernel, iterations=1) - eroded = cv2.erode(dilated, kernel, iterations=1) - dilated = cv2.dilate(eroded, kernel, iterations=1) - eroded = cv2.erode(dilated, kernel, iterations=1) - return eroded - - def get_information(img_list, file_format): """ extracts information from images diff --git a/api/extractor/format2.py b/api/extractor/format2.py deleted file mode 100644 index ba305e0..0000000 --- a/api/extractor/format2.py +++ /dev/null @@ -1,27 +0,0 @@ -import re - - -def extract_details_format2(text): - regex = "Preoperative History and Physical Exam([\n\r]*)([0-9/]+)([\n\r])+([a-zA-Z\- ]+)([\n\r]*)([0-9/]+)" - search = re.search(regex, text).groups() - name = search[3] - name = " ".join(name.strip().split(",")[::-1]).strip() - dob = search[-1] - - gender_regex = f"{name} is (a|an) ([0-9]+) y.o. (male|female|Male|Female|M|F|m|f)" - gender_search = re.search(gender_regex, text).groups() - gender = gender_search[2] - if gender.lower()[0] == "m": - gender = "M" - else: - gender = "F" - - patient = [ - { - "name": name, - "gender": gender, - # "phone": phone, - "dob": dob, - # "address": address - }] - return patient diff --git a/api/extractor/format3.py b/api/extractor/format3.py deleted file mode 100644 index 53c3183..0000000 --- a/api/extractor/format3.py +++ /dev/null @@ -1,54 +0,0 @@ -import re - - -def extract_details_format3(text): - name_regex = r"Name:[ ]*([a-zA-Z, -]+)" - name_search = re.search(name_regex, text).groups() - - if name_search != None: - name = str(name_search[0]) - - name = " ".join(name.strip().split(",")[::-1]).strip() - -# gender_regex = r"Gender: ([M|F]?)([\s]*)Phone" -# gender_search = re.search(gender_regex, text).groups() - -# if gender_search != None: -# gender = str(gender_search[0]) - -# gender = gender.strip() - -# phone_regex = r"Phone:[ ]+([0-9\-]+)" -# phone_search = re.search(phone_regex, text).groups() - -# if phone_search != None: -# phone = str(phone_search[0]) - -# phone = phone.strip() - - dob_regex = r"DOB:[ ]*([0-9\/]+)" - dob_search = re.search(dob_regex, text).groups() - - if dob_search != None: - dob = str(dob_search[0]) - - dob = dob.strip() - - gender_regex = f"{name} is (a|an) ([0-9]+) (year old|y.o.) (male|female|Male|Female|M|F|m|f)" - gender_search = re.search(gender_regex, text).groups() - gender = gender_search[-1] - if gender.lower()[0] == "m": - gender = "M" - else: - gender = "F" - - patient = [ - { - "name": name, - "gender": gender, - # "phone": phone, - "dob": dob, - # "address": address - } - ] - return patient diff --git a/api/extractor/format4.py b/api/extractor/format4.py deleted file mode 100644 index 428717b..0000000 --- a/api/extractor/format4.py +++ /dev/null @@ -1,64 +0,0 @@ -import re - - -def extract_details_format4(text): - name_regex = r"Patient:[ ]*([a-zA-Z, -]+)[ ]*DOB" - name_search = re.search(name_regex, text).groups() - - if name_search != None: - name = str(name_search[0]) - - name = " ".join(name.strip().split(",")[::-1]).strip() - - dob_regex = r"DOB:[ ]*([0-9\/]+)[ ]*Visit" - dob_search = re.search(dob_regex, text).groups() - - if dob_search != None: - dob = str(dob_search[0]) - - dob = dob.strip() - - gender_regex = f"(sex|gender|SEX|Sex|Gender|GENDER):[ ]*(male|female|Male|Female|M|F|m|f)" - gender_search = re.search(gender_regex, text).groups() - gender = gender_search[-1] - if gender.lower()[0] == "m": - gender = "M" - else: - gender = "F" - - address_regex = r"Address:[ ]*([0-9A-Za-z\n\s\- ,]+) Pref." - address_search = re.search(address_regex, text).groups() - - if address_search != None: - address = str(address_search[0]) - - address = address.strip() - - phone_regex = "Pref.[ ]*Phone\([A-Za-z]+\):[ ]*([0-9\-]*)" - phone_search = re.search(phone_regex, text).groups() - if phone_search != None: - print(phone_search) - phone = str(phone_search[-1]) - - phone = phone.strip() - - referred_by_regex = r"Referred[ ]*By:[ ]*([a-zA-Z, -]+)" - referred_by_search = re.search(referred_by_regex, text).groups() - - if referred_by_search != None: - referred_by = str(referred_by_search[0]) - - referred_by = " ".join(referred_by.strip().split(",")[::-1]).strip() - - patient = [ - { - "name": name, - "gender": gender, - "phone": phone, - "dob": dob, - "address": address, - "referred_by": referred_by - } - ] - - return patient diff --git a/api/image_utils/image_to_string.py b/api/image_utils/image_to_string.py index 05faeb1..3003498 100644 --- a/api/image_utils/image_to_string.py +++ b/api/image_utils/image_to_string.py @@ -1,5 +1,4 @@ import pytesseract -from image_utils.segment import get_lines # not working config_str = ( @@ -23,18 +22,3 @@ def from_image_to_string(img_list): text_list.append(text) text = "\n".join(text_list) return text - - -def from_lines_to_string(img_list): - """ - converts the list of images into lines and extracts text from lines - """ - text_list = [] - for img in img_list: - lines = get_lines(img) - for line in lines: - text = str(pytesseract.image_to_string(line, lang='eng')) - text = text.replace('-\n', '') - text_list.append(text) - text = "\n".join(text_list) - return text diff --git a/api/image_utils/segment.py b/api/image_utils/segment.py deleted file mode 100644 index 178d8fa..0000000 --- a/api/image_utils/segment.py +++ /dev/null @@ -1,32 +0,0 @@ -from cv2 import cv2 -import numpy as np - - -def get_lines(img): - """ - returns a list of numpy ndarrays containing line segments extracted from the image # noqa - """ - lines = [] - - # pre-processing image - img = cv2.cvtColor(np.array(img), cv2.COLOR_RGB2BGR) - gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) - th, threshed = cv2.threshold(gray, 127, 255, cv2.THRESH_BINARY_INV | cv2.THRESH_OTSU) # noqa - - # finding lines - hist = cv2.reduce(threshed, 1, cv2.REDUCE_AVG).reshape(-1) - th = 1 - H = img.shape[0] - uppers = [y for y in range(H-1) if hist[y] <= th and hist[y+1] > th] - lowers = [y for y in range(H-1) if hist[y] > th and hist[y+1] <= th] - - # storing image line by line in a list - threshed = cv2.bitwise_not(threshed) - min_height = 40 - max_height = 100 - for s, e in zip(uppers[:-1], lowers[1:]): - if e-s > min_height and e-s < max_height: - temp_img = cv2.copyMakeBorder((threshed[s-5:e+5]), 50, 50, 0, 0, cv2.BORDER_CONSTANT, None, (255, 255, 255)) # noqa - lines.append(temp_img) - - return lines From dbb0bfa490b3d4e6c3dccefc831612c0d2c08837 Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 19:25:49 +0530 Subject: [PATCH 18/33] added vscode config to gitignore --- .gitignore | 2 ++ .vscode/settings.json | 5 ----- 2 files changed, 2 insertions(+), 5 deletions(-) delete mode 100644 .vscode/settings.json diff --git a/.gitignore b/.gitignore index 5816939..25c5118 100644 --- a/.gitignore +++ b/.gitignore @@ -126,3 +126,5 @@ dmypy.json # Pyre type checker .pyre/ + +.vscode \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json deleted file mode 100644 index 9fadd3a..0000000 --- a/.vscode/settings.json +++ /dev/null @@ -1,5 +0,0 @@ -{ - "python.linting.pylintEnabled": false, - "python.linting.flake8Enabled": true, - "python.linting.enabled": true -} \ No newline at end of file From 283ad1a397eab2084fc76d2d174cb6826c3d9853 Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 19:44:04 +0530 Subject: [PATCH 19/33] moved util funcitons to util library --- api/app.py | 32 ++++---------------------------- api/utils/generic_utils.py | 18 ++++++++++++++++++ 2 files changed, 22 insertions(+), 28 deletions(-) create mode 100644 api/utils/generic_utils.py diff --git a/api/app.py b/api/app.py index b301345..d30e3a0 100644 --- a/api/app.py +++ b/api/app.py @@ -1,9 +1,8 @@ import os import sys -import random -import string import logging from flask import Flask, request, json +from utils.generic_utils import get_random_string, allowed_file from parser.parser import parse from flask_cors import CORS ROOT_DIR = os.path.dirname(__file__) @@ -15,29 +14,10 @@ app.config['UPLOAD_FOLDER'] = "uploads" app.config['MAX_CONTENT_LENGTH'] = 16 * 1024 * 1024 cors = CORS(app) -# gunicorn_logger = logging.getLogger('gunicorn.error') -# app.logger.handler = gunicorn_logger.handlers -# app.logger.setLevel(gunicorn_logger.level) - - -def get_random_string(length): - var = ''.join( - [ - random.choice(string.ascii_letters + string.digits) - for n in range(length) - ] - ) - return var - - -def allowed_file(filename): - ALLOWED_EXTENSIONS = set(['pdf']) - return '.' in filename\ - and filename.rsplit('.', 1)[1].lower() in ALLOWED_EXTENSIONS @app.route('/ocr', methods=['POST']) -def extract_fields(): +def ocr_patient_details(): file_path = '' try: format = request.form['format'] @@ -48,12 +28,8 @@ def extract_fields(): file.save(file_path) text, patient, error = parse(file_path, format) app.logger.info("----------------------------------") - app.logger.info(patient) - app.logger.info("-----------------------------------") - app.logger.info(error) - app.logger.info("---------------------------------------") - app.logger.info(text) - app.logger.info("------------------------------------------") + app.logger.info(f"Patient: {patient}") + app.logger.info("----------------------------------") response = app.response_class( response=json.dumps({ "text": text, diff --git a/api/utils/generic_utils.py b/api/utils/generic_utils.py new file mode 100644 index 0000000..b74a90a --- /dev/null +++ b/api/utils/generic_utils.py @@ -0,0 +1,18 @@ +import random +import string + + +def get_random_string(length): + var = ''.join( + [ + random.choice(string.ascii_letters + string.digits) + for n in range(length) + ] + ) + return var + + +def allowed_file(filename): + ALLOWED_EXTENSIONS = set(['pdf']) + return '.' in filename\ + and filename.rsplit('.', 1)[1].lower() in ALLOWED_EXTENSIONS From 43cec92ddd30a6d8c5868a1281f02704943de00e Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 19:44:15 +0530 Subject: [PATCH 20/33] converted util folder to pakcage --- api/utils/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 api/utils/__init__.py diff --git a/api/utils/__init__.py b/api/utils/__init__.py new file mode 100644 index 0000000..e69de29 From f90c4d9ce7f114dfe8f76da035ca83c313cd0676 Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 19:44:31 +0530 Subject: [PATCH 21/33] moved image_to_text to utils --- api/extractor/extract.py | 4 ++-- api/{image_utils/image_to_string.py => utils/image_utils.py} | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) rename api/{image_utils/image_to_string.py => utils/image_utils.py} (93%) diff --git a/api/extractor/extract.py b/api/extractor/extract.py index 2ad1a9d..9b3264f 100644 --- a/api/extractor/extract.py +++ b/api/extractor/extract.py @@ -1,7 +1,7 @@ import cv2 from flask import current_app as app from extractor import format1 -from image_utils.image_to_string import from_image_to_string +from utils.image_utils import get_text_from_image_list import numpy as np functions = { @@ -20,7 +20,7 @@ def get_information(img_list, file_format): temp = cv2.resize(gray, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) # noqa img_list[i] = cv2.adaptiveThreshold(temp, 255, cv2.ADAPTIVE_THRESH_GAUSSIAN_C, cv2.THRESH_BINARY, 61, 11) # noqa - text = from_image_to_string(img_list) + text = get_text_from_image_list(img_list) app.logger.info(text) patient = functions[file_format].extract_details(text) # check for missing values in patient diff --git a/api/image_utils/image_to_string.py b/api/utils/image_utils.py similarity index 93% rename from api/image_utils/image_to_string.py rename to api/utils/image_utils.py index 3003498..3159ec0 100644 --- a/api/image_utils/image_to_string.py +++ b/api/utils/image_utils.py @@ -10,7 +10,7 @@ ) -def from_image_to_string(img_list): +def get_text_from_image_list(img_list): """ extracts text from the list of images applies tesseract on entire image without any preprocessing From 26d3529ca6183c31b9502a85811601520e0ddfe2 Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 21:00:21 +0530 Subject: [PATCH 22/33] added format as a drop and refined code --- frontend/src/components/Main.vue | 171 ++++++++++++++++++------------- 1 file changed, 98 insertions(+), 73 deletions(-) diff --git a/frontend/src/components/Main.vue b/frontend/src/components/Main.vue index e0ee627..0d1e98c 100644 --- a/frontend/src/components/Main.vue +++ b/frontend/src/components/Main.vue @@ -1,9 +1,12 @@ From 4764a82a0b7e0fa2e38e5bbaa791e38fa5cec89b Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 21:00:49 +0530 Subject: [PATCH 23/33] refactored code --- api/extractor/__init__.py | 33 +++++++++ api/extractor/extract.py | 38 ---------- api/extractor/extract_details.py | 33 +++++++++ .../{format1.py => patient_details.py} | 0 api/parser/parser.py | 8 +-- api/utils/image_utils.py | 71 ++++++++++++++++--- 6 files changed, 132 insertions(+), 51 deletions(-) delete mode 100644 api/extractor/extract.py create mode 100644 api/extractor/extract_details.py rename api/extractor/{format1.py => patient_details.py} (100%) diff --git a/api/extractor/__init__.py b/api/extractor/__init__.py index e69de29..8acf14a 100644 --- a/api/extractor/__init__.py +++ b/api/extractor/__init__.py @@ -0,0 +1,33 @@ +from flask import current_app as app +from extractor import patient_details +from utils.image_utils import get_text_from_image_list + +functions = { + 'patient_details': patient_details +} + + +def extract_details(page_list, file_format): + """Extract details from a page list + + Extract details from a page list depending upon the document type. + + Parameters + ---------- + page_list : list(np.ndarray) + list of pages extracted from pdf + file_format : str + format a particular file is following + + Returns + ------- + text: str + text as extracted from teh set of images + data: list(tuple) + data stored as list of tuples + """ + + text = get_text_from_image_list(page_list) + app.logger.info(text) + data = functions[file_format].extract_details(text) + return text, data diff --git a/api/extractor/extract.py b/api/extractor/extract.py deleted file mode 100644 index 9b3264f..0000000 --- a/api/extractor/extract.py +++ /dev/null @@ -1,38 +0,0 @@ -import cv2 -from flask import current_app as app -from extractor import format1 -from utils.image_utils import get_text_from_image_list -import numpy as np - -functions = { - 'format1': format1 -} - - -def get_information(img_list, file_format): - """ - extracts information from images - returns dict containing information - """ - # first pass - for i in range(len(img_list)): - gray = cv2.cvtColor(np.array(img_list[i]), cv2.COLOR_BGR2GRAY) - temp = cv2.resize(gray, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) # noqa - img_list[i] = cv2.adaptiveThreshold(temp, 255, cv2.ADAPTIVE_THRESH_GAUSSIAN_C, cv2.THRESH_BINARY, 61, 11) # noqa - - text = get_text_from_image_list(img_list) - app.logger.info(text) - patient = functions[file_format].extract_details(text) - # check for missing values in patient - # empty_values = [] - # for k, v in patient.items(): - # if v == '': - # empty_values.append(k) - # if empty_values: - # text_2 = from_lines_to_string(img_list) - # for key in empty_values: - # patient[key] = functions[file_format].extract_details(text_2, key) # noqa - - # returned well formated patient information - # patient = functions[file_format].map_to_format(patient) - return text, patient diff --git a/api/extractor/extract_details.py b/api/extractor/extract_details.py new file mode 100644 index 0000000..8acf14a --- /dev/null +++ b/api/extractor/extract_details.py @@ -0,0 +1,33 @@ +from flask import current_app as app +from extractor import patient_details +from utils.image_utils import get_text_from_image_list + +functions = { + 'patient_details': patient_details +} + + +def extract_details(page_list, file_format): + """Extract details from a page list + + Extract details from a page list depending upon the document type. + + Parameters + ---------- + page_list : list(np.ndarray) + list of pages extracted from pdf + file_format : str + format a particular file is following + + Returns + ------- + text: str + text as extracted from teh set of images + data: list(tuple) + data stored as list of tuples + """ + + text = get_text_from_image_list(page_list) + app.logger.info(text) + data = functions[file_format].extract_details(text) + return text, data diff --git a/api/extractor/format1.py b/api/extractor/patient_details.py similarity index 100% rename from api/extractor/format1.py rename to api/extractor/patient_details.py diff --git a/api/parser/parser.py b/api/parser/parser.py index f6cceba..439cd35 100644 --- a/api/parser/parser.py +++ b/api/parser/parser.py @@ -2,7 +2,7 @@ import sys import logging from pdf2image import convert_from_path -from extractor.extract import get_information +from extractor import extract_details ROOT_DIR = os.path.dirname(__file__) PARENT_DIR = os.path.dirname(__file__) + '/' + str(os.pardir) @@ -22,8 +22,8 @@ def parse(file_name, file_format): error = None try: # app.logger.info("------") - text, patient = get_information(pages, file_format) + text, data = extract_details(pages, file_format) except Exception as e: - patient = None + data = None error = e - return text, patient, error + return text, data, error diff --git a/api/utils/image_utils.py b/api/utils/image_utils.py index 3159ec0..533b672 100644 --- a/api/utils/image_utils.py +++ b/api/utils/image_utils.py @@ -1,6 +1,7 @@ import pytesseract +import cv2 +import numpy as np -# not working config_str = ( r'-c tessedit_char_whitelist=" 0123456789' r'abcdefghijklmnopqrstuvwxyz' @@ -11,14 +12,66 @@ def get_text_from_image_list(img_list): + """[summary] + + [extended_summary] + + Parameters + ---------- + img_list : list(np.ndarray) + list of images to extract text from, supposed to be different pages of + the same document in an order. + + Returns + ------- + str + text extracted and combined from all the images. """ - extracts text from the list of images - applies tesseract on entire image without any preprocessing - """ - text_list = [] - for img in img_list: - text = str(pytesseract.image_to_string(img, lang='eng')) - text = text.replace('-\n', '') - text_list.append(text) + + text_list = [get_text_from_image(img) for img in img_list] text = "\n".join(text_list) return text + + +def get_text_from_image(img): + """extract text from an image + + Use tesseract to get text from an image + + Parameters + ---------- + img : np.ndarray + image to get text from. + + Returns + ------- + str + text extracted from the img. + """ + + processed_img = preprocess_image(img) + text = str(pytesseract.image_to_string(processed_img, lang='eng')) + text = text.replace('-\n', '') + return text + + +def preprocess_image(img): + """preprocess image to make it suitable for reading text + + Applies various morphological operations to the image to get better text + + Parameters + ---------- + img : np.ndarray + image to processed + + Returns + ------- + np.ndarray + preprocessed img + """ + + gray = cv2.cvtColor(np.array(img), cv2.COLOR_BGR2GRAY) + resized = cv2.resize(gray, None, fx=2, fy=2, interpolation=cv2.INTER_LINEAR) # noqa + processed_img = cv2.adaptiveThreshold(resized, 255, cv2.ADAPTIVE_THRESH_GAUSSIAN_C, cv2.THRESH_BINARY, 61, 11) # noqa + return processed_img From 0cf5278bbc8d0b38793311d1b70f235d2344437f Mon Sep 17 00:00:00 2001 From: Karandeep Grover Date: Sat, 27 Feb 2021 21:44:10 +0530 Subject: [PATCH 24/33] use custom endpoint using env --- frontend/.env.example | 1 + frontend/package-lock.json | 4032 +++++++++++++++++++++++++++++- frontend/package.json | 6 +- frontend/src/components/Main.vue | 5 +- frontend/src/constants.js | 2 + frontend/vue.config.js | 3 + 6 files changed, 3999 insertions(+), 50 deletions(-) create mode 100644 frontend/.env.example create mode 100644 frontend/src/constants.js create mode 100644 frontend/vue.config.js diff --git a/frontend/.env.example b/frontend/.env.example new file mode 100644 index 0000000..61a0b70 --- /dev/null +++ b/frontend/.env.example @@ -0,0 +1 @@ +VUE_APP_API_BASE_URL=http://0.0.0.0:5001 \ No newline at end of file diff --git a/frontend/package-lock.json b/frontend/package-lock.json index c1d2a9b..c225bcb 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -4,12 +4,2472 @@ "lockfileVersion": 1, "requires": true, "dependencies": { + "@babel/code-frame": { + "version": "7.12.13", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.13.tgz", + "integrity": "sha512-HV1Cm0Q3ZrpCR93tkWOYiuYIgLxZXZFVG2VgK+MBWjUqZTundupbfx2aXarXuw5Ko5aMcjtJgbSs4vUGBS5v6g==", + "dev": true, + "requires": { + "@babel/highlight": "^7.12.13" + } + }, + "@babel/helper-validator-identifier": { + "version": "7.12.11", + "resolved": "https://registry.npmjs.org/@babel/helper-validator-identifier/-/helper-validator-identifier-7.12.11.tgz", + "integrity": 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"parse-json": { @@ -11322,6 +15231,15 @@ "minimalistic-assert": "^1.0.0" } }, + "wcwidth": { + "version": "1.0.1", + "resolved": "https://registry.npmjs.org/wcwidth/-/wcwidth-1.0.1.tgz", + "integrity": "sha1-8LDc+RW8X/FSivrbLA4XtTLaL+g=", + "dev": true, + "requires": { + "defaults": "^1.0.3" + } + }, "webpack": { "version": "3.12.0", "resolved": "https://registry.npmjs.org/webpack/-/webpack-3.12.0.tgz", @@ -11455,6 +15373,16 @@ "ws": "^4.0.0" } }, + "webpack-chain": { + "version": "6.5.1", + "resolved": "https://registry.npmjs.org/webpack-chain/-/webpack-chain-6.5.1.tgz", + "integrity": "sha512-7doO/SRtLu8q5WM0s7vPKPWX580qhi0/yBHkOxNkv50f6qB76Zy9o2wRTrrPULqYTvQlVHuvbA8v+G5ayuUDsA==", + "dev": true, + "requires": { + "deepmerge": "^1.5.2", + "javascript-stringify": "^2.0.1" + } + }, "webpack-dev-middleware": { "version": "1.12.2", "resolved": "https://registry.npmjs.org/webpack-dev-middleware/-/webpack-dev-middleware-1.12.2.tgz", @@ -11696,6 +15624,16 @@ } } }, + "webpack-log": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/webpack-log/-/webpack-log-2.0.0.tgz", + "integrity": "sha512-cX8G2vR/85UYG59FgkoMamwHUIkSSlV3bBMRsbxVXVUk2j6NleCKjQ/WE9eYg9WY4w25O9w8wKP4rzNZFmUcUg==", + "dev": true, + "requires": { + "ansi-colors": "^3.0.0", + "uuid": "^3.3.2" + } + }, "webpack-merge": { "version": "4.2.2", "resolved": "https://registry.npmjs.org/webpack-merge/-/webpack-merge-4.2.2.tgz", diff --git a/frontend/package.json b/frontend/package.json index 26f6c48..244765c 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -2,12 +2,13 @@ "name": "ocr-paper", "version": "1.0.0", "description": "A Vue.js project", - "author": "Rahul ", + "author": "Karandeep ", "private": true, "scripts": { "dev": "webpack-dev-server --inline --progress --config build/webpack.dev.conf.js", "start": "npm run dev", - "build": "node build/build.js" + "build": "node build/build.js", + "serve": "vue-cli-service serve" }, "dependencies": { "axios": "^0.21.1", @@ -17,6 +18,7 @@ "vue2-dropzone": "^3.6.0" }, "devDependencies": { + "@vue/cli-service": "~4.5.0", "autoprefixer": "^7.1.2", "babel-core": "^6.22.1", "babel-helper-vue-jsx-merge-props": "^2.0.3", diff --git a/frontend/src/components/Main.vue b/frontend/src/components/Main.vue index 0d1e98c..ee7d39a 100644 --- a/frontend/src/components/Main.vue +++ b/frontend/src/components/Main.vue @@ -13,7 +13,7 @@ accept=".pdf" :auto-upload="false" :data="data" - action="http://0.0.0.0:5001/ocr" + :action="ocr_endpoint" :on-success="onSuccess" > @@ -76,6 +76,7 @@