Question about euploid samples

[emanuelavilla]

Hello!
Thanks for this interesting tool!

I have a question for you: I could not well understand from the paper if the tool could work for diploid cells (for example I am working on scATAC-Seq data from pre-leukemic murine cells).

Thanks

[thek71]

Hi,

in the paper we have a examples of different diploid samples (brain, bone marrow and PBMCs) that epiAneufinder should not have identified CNVs.
What we did find and report in the paper is that there where actually no CNVs found, just some random noise.
Based on the above, we conclude that epiAneufinder manages to identify diploid samples as such.

Best,
Katia