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Html visualization not working! #119

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aa-samad opened this issue May 17, 2024 · 1 comment
Open

Html visualization not working! #119

aa-samad opened this issue May 17, 2024 · 1 comment

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@aa-samad
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VCF input: 1000 variant from the HG00096 sample in the GRCh38 dataset in a vcf file (here renamed to .txt for upload allowance from GitHub)
sample.txt

The Julia version: 1.6 LTS
system: Ubuntu 20.04 LTS (kernel: 5.15)

I'm trying:

viva -f sample.vcf -m genotype -s html -o ~/Desktop/

and the HTML does not work! white screen!

  • The interactive visualization window in Julia closes immediately!
    The png and pdf work fine!
@aa-samad
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aa-samad commented May 17, 2024

Oh! now I have realized the png/pdf output is also not correct?
Do we have some sort of cutoff for the variants to show?
Genotype_a vcf

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