nf-core segmentation module

[luiskuhn]

Hi @anwai98 ,
at a Nextflow/nf-core for bioimage workshop in Tübingen we came up with the idea of using micro-sam as a CLI tool which takes in as input prompts the output of another segmentation module (e.g. cellpose, mesmer).
You mentioned we should create an issue to follow up on this, now that the nf-core hackathon is in full swing, I though it would be good to create the issue.
Here is the related nf-core issue/task to create a module for micro-sam: nf-core/modules#6703
Best regards, Luis

[kbestak]

#698
Caro is working on this during the nf-core hackathon currently.

[constantinpape]

Hi @luiskuhn ,
as pointed out by @kbestak we are already discussing this in #698 ;).
So I will close this to keep the discussion there.

[luiskuhn]

Sounds great, thanks for the pointer :)