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Minimal fixes to restore function #80

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This PR provides the minimal amount of fixes to ensure that the software works with Python 3.12.7.

Several recent changes (in the past 6 years) have deprecated and/or removed certain dependencies. Those missing dependencies are now added to the requirements.txt file

Notably, this will also:

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SyntaxWarning: invalid escape sequence '\d' matplotlib >=3.8.0 breaks pyqso when cartopy is installed
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