forked from KratosMultiphysics/Kratos
-
Notifications
You must be signed in to change notification settings - Fork 0
457 lines (383 loc) · 16.9 KB
/
ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
name: CI
on:
pull_request:
branches:
- master
workflow_dispatch:
# for cancelling redundant runs
concurrency:
group: ci-${{ github.head_ref }}
cancel-in-progress: true
permissions:
contents: read
jobs:
ubuntu:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
build-type: [Custom, FullDebug]
compiler: [gcc, clang]
env:
KRATOS_BUILD_TYPE: ${{ matrix.build-type }}
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0)
OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages
container:
image: kratosmultiphysics/kratos-image-ci-ubuntu-20-04:latest
options: --user 1001
steps:
- uses: actions/checkout@v4
- name: Build
shell: bash
run: |
if [ ${{ matrix.compiler }} = gcc ]; then
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
export KRATOS_CMAKE_OPTIONS_FLAGS="-DUSE_EIGEN_MKL=ON -DUSE_EIGEN_FEAST=ON -DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF -DMMG_ROOT=/external_libraries/mmg/mmg_5_5_1/ -DPMMG_ROOT=/external_libraries/ParMmg_5ffc6ad -DINCLUDE_PMMG=ON"
export KRATOS_CMAKE_CXX_FLAGS="-std=c++11 -Werror -Wno-deprecated-declarations -Wignored-qualifiers"
elif [ ${{ matrix.compiler }} = clang ]; then
export CC=/usr/bin/clang
export CXX=/usr/bin/clang++
export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations"
if [ ${{ matrix.build-type }} = FullDebug ]; then
export KRATOS_CMAKE_CXX_FLAGS="${KRATOS_CMAKE_CXX_FLAGS} -std=c++17"
else
export KRATOS_CMAKE_CXX_FLAGS="${KRATOS_CMAKE_CXX_FLAGS} -std=c++11"
fi
export KRATOS_CMAKE_OPTIONS_FLAGS="-DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF -DMMG_ROOT=/external_libraries/mmg/mmg_5_4_1/"
else
echo 'Unsupported compiler: ${{ matrix.compiler }}'
exit 1
fi
source /opt/intel/oneapi/setvars.sh
cp .github/workflows/configure.sh configure.sh
bash configure.sh
- name: Running python tests
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
python3 kratos/python_scripts/run_tests.py -v 2 -l nightly -c python3
- name: Running MPICore C++ tests (2 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
mpiexec -np 2 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (3 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
mpiexec -np 3 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (4 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
mpiexec -np 4 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running Python MPI tests (2 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 2
- name: Running Python MPI tests (3 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 3
- name: Running Python MPI tests (4 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 4
windows:
runs-on: windows-2022
env:
KRATOS_BUILD_TYPE: Custom
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v4
with:
python-version: '3.8'
- name: Download boost
run: |
$url = "https://sourceforge.net/projects/boost/files/boost/1.74.0/boost_1_74_0.tar.gz/download"
(New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz")
7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null
7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null
- name: Installing dependencies
shell: cmd
run: |
pip install numpy
pip install sympy
pip install h5py
- name: Build
shell: cmd
run: |
copy .\.github\workflows\configure.cmd
configure.cmd
- name: Running python tests
shell: cmd
run: |
set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%
set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs
python kratos/python_scripts/run_tests.py -l nightly -c python
centos:
runs-on: ubuntu-latest
env:
KRATOS_BUILD_TYPE: Custom
container:
image: kratosmultiphysics/kratos-image-ci-centos7-python35:latest
options: --user 1001
steps:
- uses: actions/checkout@v4
- name: Build
run: |
cp .github/workflows/centos_configure.sh centos_configure.sh
bash centos_configure.sh
- name: Running python tests
run: |
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3.5 kratos/python_scripts/run_tests.py -l nightly -c python3.5
ubuntu-core-without-unity:
runs-on: ubuntu-latest
env:
KRATOS_BUILD_TYPE: Custom
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0)
container:
image: kratosmultiphysics/kratos-image-ci-ubuntu-20-04:latest
options: --user 1001
env:
CCACHE_SLOPPINESS: pch_defines,time_macros
CCACHE_COMPILERCHECK: content
CCACHE_COMPRESS: true
CCACHE_NODISABLE: true
CCACHE_MAXSIZE: 500M
steps:
- uses: actions/checkout@v4
- name: Cache Build
id: cache-build
uses: actions/cache@v3
with:
path: ~/.ccache
key: ${{ runner.os }}-no-unity-ccache-${{ github.sha }}
restore-keys: ${{ runner.os }}-no-unity-ccache-
- name: Build
shell: bash
run: |
export CC=/usr/lib/ccache/clang-10
export CXX=/usr/lib/ccache/clang++-10
export KRATOS_SOURCE="${KRATOS_SOURCE:-${PWD}}"
export KRATOS_BUILD="${KRATOS_SOURCE}/build"
export KRATOS_APP_DIR="${KRATOS_SOURCE}/applications"
export PYTHON_EXECUTABLE="/usr/bin/python3.8"
export KRATOS_INSTALL_PYTHON_USING_LINKS=ON
add_app () {
export KRATOS_APPLICATIONS="${KRATOS_APPLICATIONS}$1;"
}
add_app ${KRATOS_APP_DIR}/LinearSolversApplication;
add_app ${KRATOS_APP_DIR}/MetisApplication;
add_app ${KRATOS_APP_DIR}/TrilinosApplication;
source /opt/intel/oneapi/setvars.sh
# Configure
cmake -H"${KRATOS_SOURCE}" -B"${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" \
-DUSE_MPI=ON \
-DPYBIND11_PYTHON_VERSION="3.8" \
-DTRILINOS_INCLUDE_DIR="/usr/include/trilinos" \
-DTRILINOS_LIBRARY_DIR="/usr/lib/x86_64-linux-gnu" \
-DTRILINOS_LIBRARY_PREFIX="trilinos_" \
-DINSTALL_RUNKRATOS=OFF
# Buid
cmake --build "${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" --target install -- -j2
ccache -s
- name: Running python tests
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/run_tests.py -l nightly -c python3
- name: Running MPICore C++ tests (2 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 2 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (3 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 3 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (4 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 4 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running Python MPI tests (2 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 2
- name: Running Python MPI tests (3 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 3
- name: Running Python MPI tests (4 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 4
windows-core-without-unity:
runs-on: windows-2022
env:
KRATOS_BUILD_TYPE: Custom
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v4
with:
python-version: '3.8'
- name: Download boost
run: |
$url = "https://sourceforge.net/projects/boost/files/boost/1.74.0/boost_1_74_0.tar.gz/download"
(New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz")
7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null
7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null
- name: Installing dependencies
shell: cmd
run: |
pip install numpy
pip install sympy
- name: Build
shell: cmd
run: |
call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64 || goto :error
set CC=cl.exe
set CXX=cl.exe
set KRATOS_SOURCE=%cd%
set KRATOS_BUILD=%cd%\build
set KRATOS_APP_DIR=applications
set KRATOS_APPLICATIONS=%KRATOS_APP_DIR%\LinearSolversApplication;
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\cmake_install.cmake"
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeCache.txt"
del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeFiles"
cmake ^
-G"Visual Studio 17 2022" ^
-H"%KRATOS_SOURCE%" ^
-B"%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" ^
-DBOOST_ROOT="%TEMP%\boost" ^
-DINSTALL_RUNKRATOS=OFF ^
-DCMAKE_CXX_FLAGS="/Od /we4661 /we4804 /WX /wd4996" ^
-DFORCE_LOCAL_ZLIB_COMPILATION=ON || goto :error
cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target all_build -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error
cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target install -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error
goto :EOF
:error
echo Failed with error #%errorlevel%.
exit /b %errorlevel%
- name: Running python tests
shell: cmd
run: |
set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%
set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs
python kratos/python_scripts/run_tests.py -l nightly -c python
ubuntu-intel:
runs-on: ubuntu-latest
env:
KRATOS_BUILD_TYPE: Custom
OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0)
OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages
container:
image: kratosmultiphysics/kratos-image-ci-ubuntu-20-04:latest
options: --user 1001
steps:
- uses: actions/checkout@v4
- name: Build
shell: bash
run: |
export CC=icc
export CXX=icpc
source /opt/intel/oneapi/setvars.sh
cp .github/workflows/intel_configure.sh configure.sh
bash configure.sh
- name: Running python tests
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/run_tests.py -l nightly -c python3
- name: Running MPICore C++ tests (2 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 2 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (3 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 3 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running MPICore C++ tests (4 Cores)
shell: bash
timeout-minutes : 10
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
mpiexec -np 4 python3 kratos/python_scripts/run_cpp_mpi_tests.py --using-mpi
- name: Running Python MPI tests (2 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 2
- name: Running Python MPI tests (3 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 3
- name: Running Python MPI tests (4 Cores)
shell: bash
run: |
source /opt/intel/oneapi/setvars.sh
export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs
python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l nightly -n 4