diff --git a/test/test_data/bed/hg19/correct/hg19_example1.bed b/test/test_data/bed/hg19/correct/hg19_example1.bed new file mode 100644 index 0000000..829c71a --- /dev/null +++ b/test/test_data/bed/hg19/correct/hg19_example1.bed @@ -0,0 +1,120 @@ +chr1 237773 237860 id-1 165 . -1 -1 16.5157 +chr1 713878 714346 id-2 1000 . -1 -1 100 +chr1 762742 763071 id-3 218 . -1 -1 21.8288 +chr1 779953 780126 id-4 23 . -1 -1 2.33266 +chr1 805098 805457 id-5 152 . -1 -1 15.1523 +chr1 839960 840294 id-6 145 . -1 -1 14.4875 +chr1 848140 848448 id-7 38 . -1 -1 3.80054 +chr1 856131 856198 id-8 17 . -1 -1 1.74746 +chr1 856476 856765 id-9 110 . -1 -1 10.9824 +chr1 859096 859388 id-10 109 . -1 -1 10.8968 +chr1 894493 894959 id-11 342 . -1 -1 34.2211 +chr1 895773 896075 id-12 126 . -1 -1 12.5649 +chr1 902293 902465 id-13 27 . -1 -1 2.65622 +chr1 911474 911742 id-14 65 . -1 -1 6.53318 +chr1 911804 911988 id-15 23 . -1 -1 2.31054 +chr1 935395 935753 id-16 129 . -1 -1 12.9486 +chr1 936022 936426 id-17 62 . -1 -1 6.20373 +chr1 948669 949009 id-18 114 . -1 -1 11.3562 +chr1 949849 949900 id-19 14 . -1 -1 1.38882 +chr1 954688 955293 id-20 65 . -1 -1 6.50939 +chr1 968350 968771 id-21 283 . -1 -1 28.2906 +chr1 976034 976418 id-22 168 . -1 -1 16.8043 +chr1 994893 995188 id-23 121 . -1 -1 12.1042 +chr1 1004557 1004880 id-24 67 . -1 -1 6.66826 +chr1 1051346 1051973 id-25 368 . -1 -1 36.7681 +chr1 1057588 1057782 id-26 31 . -1 -1 3.10978 +chr1 1079517 1079851 id-27 36 . -1 -1 3.6382 +chr1 1092785 1093027 id-28 63 . -1 -1 6.31569 +chr1 1144411 1144521 id-29 16 . -1 -1 1.55436 +chr1 1148870 1149087 id-30 44 . -1 -1 4.37562 +chr1 1167205 1167938 id-31 1000 . -1 -1 100 +chr1 1186331 1186611 id-32 141 . -1 -1 14.103 +chr1 1209090 1209691 id-33 388 . -1 -1 38.8309 +chr1 1227319 1227485 id-34 30 . -1 -1 3.01702 +chr1 1240979 1241269 id-35 70 . -1 -1 7.01569 +chr1 1243211 1244179 id-36 311 . -1 -1 31.1023 +chr1 1259874 1260297 id-37 317 . -1 -1 31.7083 +chr1 1260327 1260445 id-38 21 . -1 -1 2.06303 +chr1 1284661 1285394 id-39 126 . -1 -1 12.6306 +chr1 1294758 1294953 id-40 34 . -1 -1 3.35333 +chr1 1306670 1307078 id-41 119 . -1 -1 11.8911 +chr1 1307467 1307800 id-42 56 . -1 -1 5.63811 +chr1 1307805 1307931 id-43 19 . -1 -1 1.94843 +chr1 1310531 1311088 id-44 1000 . -1 -1 100 +chr1 1334601 1335287 id-45 1000 . -1 -1 100 +chr1 1337438 1337627 id-46 28 . -1 -1 2.84627 +chr1 1342493 1342893 id-47 312 . -1 -1 31.2023 +chr1 1370861 1371170 id-48 111 . -1 -1 11.0748 +chr1 1376386 1376512 id-49 21 . -1 -1 2.14935 +chr1 1406363 1406463 id-50 18 . -1 -1 1.76571 +chr1 1406833 1407287 id-51 319 . -1 -1 31.9074 +chr1 1438886 1439032 id-52 24 . -1 -1 2.36493 +chr1 1440122 1440604 id-53 203 . -1 -1 20.3326 +chr1 1446878 1447675 id-54 1000 . -1 -1 100 +chr1 1509234 1509486 id-55 45 . -1 -1 4.49284 +chr1 1509754 1510484 id-56 1000 . -1 -1 100 +chr1 1550501 1551040 id-57 349 . -1 -1 34.8716 +chr1 1551051 1551335 id-58 80 . -1 -1 7.99757 +chr1 1564236 1564437 id-59 24 . -1 -1 2.43228 +chr1 1564969 1566036 id-60 316 . -1 -1 31.6269 +chr1 1590340 1590729 id-61 180 . -1 -1 18.025 +chr1 1609384 1609550 id-62 22 . -1 -1 2.19899 +chr1 1610449 1610595 id-63 22 . -1 -1 2.19807 +chr1 1623864 1623959 id-64 321 . -1 -1 32.1349 +chr1 1624190 1624435 id-65 1000 . -1 -1 100 +chr1 1624568 1624677 id-66 183 . -1 -1 18.2555 +chr1 1655613 1656018 id-67 1000 . -1 -1 100 +chr1 1665267 1665440 id-68 26 . -1 -1 2.60431 +chr1 1677599 1677732 id-69 15 . -1 -1 1.50558 +chr1 1709748 1710754 id-70 220 . -1 -1 22.0365 +chr1 1711625 1712133 id-71 91 . -1 -1 9.09333 +chr1 1774329 1774434 id-72 25 . -1 -1 2.46096 +chr1 1822394 1823111 id-73 315 . -1 -1 31.4641 +chr1 1823131 1823194 id-74 16 . -1 -1 1.64849 +chr1 1837829 1837915 id-75 18 . -1 -1 1.76479 +chr1 1840425 1840910 id-76 123 . -1 -1 12.3148 +chr1 1850552 1851291 id-77 1000 . -1 -1 100 +chr1 1875476 1875734 id-78 67 . -1 -1 6.72533 +chr1 1891535 1891812 id-79 213 . -1 -1 21.2971 +chr1 1927725 1927863 id-80 24 . -1 -1 2.42211 +chr1 1957178 1957547 id-81 144 . -1 -1 14.4246 +chr1 1976305 1976594 id-82 120 . -1 -1 11.9712 +chr1 1977958 1978170 id-83 46 . -1 -1 4.63081 +chr1 2023113 2023382 id-84 130 . -1 -1 13.0335 +chr1 2046689 2047009 id-85 57 . -1 -1 5.68826 +chr1 2064595 2065174 id-86 135 . -1 -1 13.5372 +chr1 2077769 2078354 id-87 59 . -1 -1 5.86807 +chr1 2080162 2080509 id-88 70 . -1 -1 6.98046 +chr1 2105854 2106045 id-89 31 . -1 -1 3.08383 +chr1 2120851 2121233 id-90 204 . -1 -1 20.4203 +chr1 2126057 2126929 id-91 122 . -1 -1 12.2423 +chr1 2136329 2137107 id-92 200 . -1 -1 19.9582 +chr1 2158930 2159533 id-93 296 . -1 -1 29.5537 +chr1 2168695 2168980 id-94 80 . -1 -1 8.02432 +chr1 2186854 2187870 id-95 143 . -1 -1 14.2889 +chr1 2207674 2207847 id-96 23 . -1 -1 2.33634 +chr1 2222202 2222401 id-97 32 . -1 -1 3.22131 +chr1 2231988 2232080 id-98 17 . -1 -1 1.71205 +chr1 2232350 2232868 id-99 303 . -1 -1 30.3494 +chr1 2243006 2243227 id-100 40 . -1 -1 3.97037 +chr1 2250411 2250524 id-101 23 . -1 -1 2.34188 +chr1 2313233 2313448 id-102 45 . -1 -1 4.49845 +chr1 2322642 2322742 id-103 18 . -1 -1 1.83871 +chr1 2322746 2323519 id-104 1000 . -1 -1 100 +chr1 2343553 2344618 id-105 1000 . -1 -1 100 +chr1 2344619 2344839 id-106 18 . -1 -1 1.84967 +chr1 2345261 2345403 id-107 25 . -1 -1 2.48595 +chr1 2345707 2346172 id-108 136 . -1 -1 13.5817 +chr1 2347253 2347488 id-109 29 . -1 -1 2.87042 +chr1 2399519 2399791 id-110 131 . -1 -1 13.1176 +chr1 2425431 2425519 id-111 15 . -1 -1 1.53991 +chr1 2427752 2427937 id-112 31 . -1 -1 3.07643 +chr1 2457551 2458259 id-113 303 . -1 -1 30.3034 +chr1 2458269 2458492 id-114 30 . -1 -1 3.04392 +chr1 2477487 2477961 id-115 96 . -1 -1 9.60177 +chr1 2478333 2478633 id-116 64 . -1 -1 6.4325 +chr1 2480218 2480427 id-117 37 . -1 -1 3.69413 +chr1 2487958 2488052 id-118 16 . -1 -1 1.62586 +chr1 2516893 2517176 id-119 52 . -1 -1 5.19314 +chr1 2517689 2518403 id-120 1000 . -1 -1 100 \ No newline at end of file diff --git a/test/test_data/bed/hg19/correct/sample1.bed.gz b/test/test_data/bed/hg19/correct/sample1.bed.gz new file mode 100644 index 0000000..6d4677f Binary files /dev/null and b/test/test_data/bed/hg19/correct/sample1.bed.gz differ