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Should we standardize bed files? #62

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khoroshevskyi opened this issue Apr 11, 2024 · 2 comments
Open

Should we standardize bed files? #62

khoroshevskyi opened this issue Apr 11, 2024 · 2 comments
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@khoroshevskyi
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khoroshevskyi commented Apr 11, 2024

While I wanted to create bigbed file I got error:
image

Should we standardize bedfiles? Or what should we do in this case?

Related file: https://bedbase.org/bed/ba3e096f7ed69774a9bba86b5036e761

@khoroshevskyi khoroshevskyi added question Further information is requested high-priority labels Apr 11, 2024
@nsheff
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nsheff commented Apr 11, 2024

This will become easier when the sequence collections standard is finished. I need another month or so of work on that before we can solve this. Can you just ignore them for a few weeks and then revisit when that project is a bit more mature?

@donaldcampbelljr
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Another thing to consider, discovered during #60, is that some bed files have utf-16 encodings not utf-8. Should we attempt to convert them to utf8? What are the consequences of doing that?

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