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Skip junky chromosomes #10

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vreuter opened this issue Aug 7, 2017 · 3 comments
Open

Skip junky chromosomes #10

vreuter opened this issue Aug 7, 2017 · 3 comments
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enhancement
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0.7

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@vreuter
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vreuter commented Aug 7, 2017

A parameter for skipping processing "chromosomes" with non-standard names (unaligned/random) could be added. This could even be the default.
@nsheff nsheff added this to the 0.6 milestone Mar 22, 2019
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nsheff commented Mar 22, 2019

the problem is just 'what constitutes junky'... but we could have some heuristic like only alhpanumerics no undercores or something. might be useful.

@vreuter
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vreuter commented Mar 22, 2019

yeah and/or chrUn

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nsheff commented Mar 22, 2019

Sounds fine to me!

@vreuter vreuter modified the milestones: 0.6, 0.7 Apr 11, 2019
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