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ImportError: No module named pararead - Python 3.8.9 #44

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gmicevic opened this issue Aug 5, 2022 · 1 comment

gmicevic commented Aug 5, 2022

pepatac/tools/bamQC.py -i pepatac_test/nn1/aligned_mm10/nn1_sort.bam -c 1 -o pepatac_test/nn1/QC_mm10/nn1_bamQC.tsv (56981)

Traceback (most recent call last):
  File "pepatac/tools/bamQC.py", line 16, in 
    import pararead
ImportError: No module named pararead

pip install pararead
Requirement already satisfied: pararead in /opt/homebrew/lib/python3.9/site-packages (0.7.0)
Requirement already satisfied: pysam in /opt/homebrew/lib/python3.9/site-packages (from pararead) (0.19.1)
Requirement already satisfied: ubiquerg in /opt/homebrew/lib/python3.9/site-packages (from pararead) (0.6.2)

The text was updated successfully, but these errors were encountered:

Member

nsheff commented Aug 5, 2022

seems like a python version mismatch. look at the output of /usr/bin/env python -- is your default pip aligned with your default python?

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