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Run PEPATAC on a PEP on PEPHUB #260

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donaldcampbelljr opened this issue Dec 12, 2023 · 0 comments
Open

Run PEPATAC on a PEP on PEPHUB #260

donaldcampbelljr opened this issue Dec 12, 2023 · 0 comments
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@donaldcampbelljr
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Recently attempted to run PEPATAC from a pep on pephub. However, the project-level pipeline, pepatac collator, calls:

project = peppy.Project(args.config_file)
#results_subdir = "/home/jps3dp/processed/pepatac_tutorial//processed/results_pipeline"

This expects a config file with a .yaml file but for a PEP on PEPHub it must also be able to load a PEP from a registry path.

This discussion has come up here:
pepkit/peppy#462

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