diff --git a/R/defaultDSConfiguration.R b/R/defaultDSConfiguration.R index dbf8139..e36f360 100644 --- a/R/defaultDSConfiguration.R +++ b/R/defaultDSConfiguration.R @@ -9,7 +9,7 @@ #' @param exclude Character vector of package names to be explicitly excluded. If NULL, do not filter packages. #' #' @examples -#' { +#' \dontrun{ #' # detect DS packages #' defaultDSConfiguration() #' # exclude a DS package diff --git a/R/getDSLiteData.R b/R/getDSLiteData.R index b2bad6b..e055769 100644 --- a/R/getDSLiteData.R +++ b/R/getDSLiteData.R @@ -9,7 +9,7 @@ #' is not of class \code{\link{DSLiteConnection-class}}. #' #' @examples -#' { +#' \dontrun{ #' # DataSHIELD login #' logindata <- setupCNSIMTest() #' conns <- datashield.login(logindata, assign=TRUE) diff --git a/R/setupCNSIMTest.R b/R/setupCNSIMTest.R index c04fa02..89ac713 100644 --- a/R/setupCNSIMTest.R +++ b/R/setupCNSIMTest.R @@ -10,7 +10,7 @@ #' @return The login data for the \link{datashield.login} function. #' @family setup functions #' @examples -#' { +#' \dontrun{ #' logindata <- setupCNSIMTest() #' conns <- datashield.login(logindata, assign=TRUE) #' # do DataSHIELD analysis diff --git a/R/setupDASIMTest.R b/R/setupDASIMTest.R index 7eb0767..3787af9 100644 --- a/R/setupDASIMTest.R +++ b/R/setupDASIMTest.R @@ -10,7 +10,7 @@ #' @return The login data for the \link{datashield.login} function. #' @family setup functions #' @examples -#' { +#' \dontrun{ #' logindata <- setupDASIMTest() #' conns <- datashield.login(logindata, assign=TRUE) #' # do DataSHIELD analysis diff --git a/R/setupDATASETTest.R b/R/setupDATASETTest.R index f491c4b..23f74c1 100644 --- a/R/setupDATASETTest.R +++ b/R/setupDATASETTest.R @@ -10,7 +10,7 @@ #' @return The login data for the \link{datashield.login} function. #' @family setup functions #' @examples -#' { +#' \dontrun{ #' logindata <- setupDATASETTest() #' conns <- datashield.login(logindata, assign=TRUE) #' # do DataSHIELD analysis diff --git a/R/setupDISCORDANTTest.R b/R/setupDISCORDANTTest.R index 8a00f1e..c12df78 100644 --- a/R/setupDISCORDANTTest.R +++ b/R/setupDISCORDANTTest.R @@ -10,7 +10,7 @@ #' @return The login data for the \link{datashield.login} function. #' @family setup functions #' @examples -#' { +#' \dontrun{ #' logindata <- setupDISCORDANTTest() #' conns <- datashield.login(logindata, assign=TRUE) #' # do DataSHIELD analysis diff --git a/R/setupDSLiteServer.R b/R/setupDSLiteServer.R index b7d2d9f..ddf5a76 100644 --- a/R/setupDSLiteServer.R +++ b/R/setupDSLiteServer.R @@ -18,7 +18,7 @@ #' @family setup functions #' #' @examples -#' { +#' \dontrun{ #' logindata <- setupDSLiteServer( #' datasets = c("CNSIM1", "CNSIM2", "CNSIM3"), #' logindata = "logindata.dslite.cnsim", pkgs = "DSLite", diff --git a/R/setupSURVIVALTest.R b/R/setupSURVIVALTest.R index 333ce73..74c01a0 100644 --- a/R/setupSURVIVALTest.R +++ b/R/setupSURVIVALTest.R @@ -10,7 +10,7 @@ #' @return The login data for the \link{datashield.login} function. #' @family setup functions #' @examples -#' { +#' \dontrun{ #' logindata <- setupSURVIVALTest() #' conns <- datashield.login(logindata, assign=TRUE) #' # do DataSHIELD analysis diff --git a/man/defaultDSConfiguration.Rd b/man/defaultDSConfiguration.Rd index af5a4f5..faa0770 100644 --- a/man/defaultDSConfiguration.Rd +++ b/man/defaultDSConfiguration.Rd @@ -18,7 +18,7 @@ of R options. The DataSHIELD packages can be filtered by specifying explicitly t to be included or excluded. The package exclusion prevails over the inclusion. } \examples{ -{ +\dontrun{ # detect DS packages defaultDSConfiguration() # exclude a DS package diff --git a/man/getDSLiteData.Rd b/man/getDSLiteData.Rd index 09589e8..8813a9a 100644 --- a/man/getDSLiteData.Rd +++ b/man/getDSLiteData.Rd @@ -20,7 +20,7 @@ Get the data value corresponding to the variable with the symbol name from the \ to the \code{\link{DSConnection-class}} object(s). Can be useful when developping a DataSHIELD package. } \examples{ -{ +\dontrun{ # DataSHIELD login logindata <- setupCNSIMTest() conns <- datashield.login(logindata, assign=TRUE) diff --git a/man/setupCNSIMTest.Rd b/man/setupCNSIMTest.Rd index 701e613..9828a77 100644 --- a/man/setupCNSIMTest.Rd +++ b/man/setupCNSIMTest.Rd @@ -21,7 +21,7 @@ Load the CNSIM datasets, the corresponding login data object, instanciate a new hosting these datasets and verify that the required DataSHIELD server-side packages are installed. } \examples{ -{ +\dontrun{ logindata <- setupCNSIMTest() conns <- datashield.login(logindata, assign=TRUE) # do DataSHIELD analysis diff --git a/man/setupDASIMTest.Rd b/man/setupDASIMTest.Rd index 9cac026..444b03d 100644 --- a/man/setupDASIMTest.Rd +++ b/man/setupDASIMTest.Rd @@ -21,7 +21,7 @@ Load the DASIM datasets, the corresponding login data object, instanciate a new hosting these datasets and verify that the required DataSHIELD server-side packages are installed. } \examples{ -{ +\dontrun{ logindata <- setupDASIMTest() conns <- datashield.login(logindata, assign=TRUE) # do DataSHIELD analysis diff --git a/man/setupDATASETTest.Rd b/man/setupDATASETTest.Rd index d2e2a38..ab22cab 100644 --- a/man/setupDATASETTest.Rd +++ b/man/setupDATASETTest.Rd @@ -21,7 +21,7 @@ Load the TESTING.DATASET datasets, the corresponding login data object, instanci hosting these datasets and verify that the required DataSHIELD server-side packages are installed. } \examples{ -{ +\dontrun{ logindata <- setupDATASETTest() conns <- datashield.login(logindata, assign=TRUE) # do DataSHIELD analysis diff --git a/man/setupDISCORDANTTest.Rd b/man/setupDISCORDANTTest.Rd index 6c2abdc..9b72fb2 100644 --- a/man/setupDISCORDANTTest.Rd +++ b/man/setupDISCORDANTTest.Rd @@ -21,7 +21,7 @@ Load the DISCORDANT datasets, the corresponding login data object, instanciate a hosting these datasets and verify that the required DataSHIELD server-side packages are installed. } \examples{ -{ +\dontrun{ logindata <- setupDISCORDANTTest() conns <- datashield.login(logindata, assign=TRUE) # do DataSHIELD analysis diff --git a/man/setupDSLiteServer.Rd b/man/setupDSLiteServer.Rd index b1a0338..f6e5ca3 100644 --- a/man/setupDSLiteServer.Rd +++ b/man/setupDSLiteServer.Rd @@ -39,7 +39,7 @@ hosting these datasets, verifies that the required DataSHIELD server-side packag All the data structures are loaded by \link{data} which supports various formats (see data() documentation). } \examples{ -{ +\dontrun{ logindata <- setupDSLiteServer( datasets = c("CNSIM1", "CNSIM2", "CNSIM3"), logindata = "logindata.dslite.cnsim", pkgs = "DSLite", diff --git a/man/setupSURVIVALTest.Rd b/man/setupSURVIVALTest.Rd index 51c7cb3..de56f6a 100644 --- a/man/setupSURVIVALTest.Rd +++ b/man/setupSURVIVALTest.Rd @@ -21,7 +21,7 @@ Load the SURVIVAL (EXPAND_WITH_MISSING) datasets, the corresponding login data o hosting these datasets and verify that the required DataSHIELD server-side packages are installed. } \examples{ -{ +\dontrun{ logindata <- setupSURVIVALTest() conns <- datashield.login(logindata, assign=TRUE) # do DataSHIELD analysis