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entity_merge.ktr
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entity_merge.ktr
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<?xml version="1.0" encoding="UTF-8"?>
<transformation>
<info>
<name>entity_merge</name>
<description />
<extended_description />
<trans_version />
<trans_type>Normal</trans_type>
<trans_status>0</trans_status>
<directory>/</directory>
<parameters>
</parameters>
<log>
<trans-log-table>
<connection />
<schema />
<table />
<size_limit_lines />
<interval />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STATUS</id>
<enabled>Y</enabled>
<name>STATUS</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
<subject />
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
<subject />
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
<subject />
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
<subject />
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
<subject />
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
<subject />
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>STARTDATE</id>
<enabled>Y</enabled>
<name>STARTDATE</name>
</field>
<field>
<id>ENDDATE</id>
<enabled>Y</enabled>
<name>ENDDATE</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>DEPDATE</id>
<enabled>Y</enabled>
<name>DEPDATE</name>
</field>
<field>
<id>REPLAYDATE</id>
<enabled>Y</enabled>
<name>REPLAYDATE</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>Y</enabled>
<name>LOG_FIELD</name>
</field>
<field>
<id>EXECUTING_SERVER</id>
<enabled>N</enabled>
<name>EXECUTING_SERVER</name>
</field>
<field>
<id>EXECUTING_USER</id>
<enabled>N</enabled>
<name>EXECUTING_USER</name>
</field>
<field>
<id>CLIENT</id>
<enabled>N</enabled>
<name>CLIENT</name>
</field>
</trans-log-table>
<perf-log-table>
<connection />
<schema />
<table />
<interval />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>SEQ_NR</id>
<enabled>Y</enabled>
<name>SEQ_NR</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>INPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>INPUT_BUFFER_ROWS</name>
</field>
<field>
<id>OUTPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>OUTPUT_BUFFER_ROWS</name>
</field>
</perf-log-table>
<channel-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>LOGGING_OBJECT_TYPE</id>
<enabled>Y</enabled>
<name>LOGGING_OBJECT_TYPE</name>
</field>
<field>
<id>OBJECT_NAME</id>
<enabled>Y</enabled>
<name>OBJECT_NAME</name>
</field>
<field>
<id>OBJECT_COPY</id>
<enabled>Y</enabled>
<name>OBJECT_COPY</name>
</field>
<field>
<id>REPOSITORY_DIRECTORY</id>
<enabled>Y</enabled>
<name>REPOSITORY_DIRECTORY</name>
</field>
<field>
<id>FILENAME</id>
<enabled>Y</enabled>
<name>FILENAME</name>
</field>
<field>
<id>OBJECT_ID</id>
<enabled>Y</enabled>
<name>OBJECT_ID</name>
</field>
<field>
<id>OBJECT_REVISION</id>
<enabled>Y</enabled>
<name>OBJECT_REVISION</name>
</field>
<field>
<id>PARENT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>PARENT_CHANNEL_ID</name>
</field>
<field>
<id>ROOT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>ROOT_CHANNEL_ID</name>
</field>
</channel-log-table>
<step-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>N</enabled>
<name>LOG_FIELD</name>
</field>
</step-log-table>
<metrics-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>METRICS_DATE</id>
<enabled>Y</enabled>
<name>METRICS_DATE</name>
</field>
<field>
<id>METRICS_CODE</id>
<enabled>Y</enabled>
<name>METRICS_CODE</name>
</field>
<field>
<id>METRICS_DESCRIPTION</id>
<enabled>Y</enabled>
<name>METRICS_DESCRIPTION</name>
</field>
<field>
<id>METRICS_SUBJECT</id>
<enabled>Y</enabled>
<name>METRICS_SUBJECT</name>
</field>
<field>
<id>METRICS_TYPE</id>
<enabled>Y</enabled>
<name>METRICS_TYPE</name>
</field>
<field>
<id>METRICS_VALUE</id>
<enabled>Y</enabled>
<name>METRICS_VALUE</name>
</field>
</metrics-log-table>
</log>
<maxdate>
<connection />
<table />
<field />
<offset>0.0</offset>
<maxdiff>0.0</maxdiff>
</maxdate>
<size_rowset>10000</size_rowset>
<sleep_time_empty>50</sleep_time_empty>
<sleep_time_full>50</sleep_time_full>
<unique_connections>N</unique_connections>
<feedback_shown>Y</feedback_shown>
<feedback_size>50000</feedback_size>
<using_thread_priorities>Y</using_thread_priorities>
<shared_objects_file />
<capture_step_performance>N</capture_step_performance>
<step_performance_capturing_delay>1000</step_performance_capturing_delay>
<step_performance_capturing_size_limit>100</step_performance_capturing_size_limit>
<dependencies>
</dependencies>
<partitionschemas>
</partitionschemas>
<slaveservers>
</slaveservers>
<clusterschemas>
</clusterschemas>
<created_user>-</created_user>
<created_date>2019/09/23 22:09:49.068</created_date>
<modified_user>-</modified_user>
<modified_date>2019/09/23 22:09:49.068</modified_date>
<key_for_session_key>H4sIAAAAAAAAAAMAAAAAAAAAAAA=</key_for_session_key>
<is_key_private>N</is_key_private>
</info>
<notepads>
</notepads>
<connection>
<name>semmed</name>
<server>ec2-3-95-112-117.compute-1.amazonaws.com</server>
<type>MYSQL</type>
<access>Native</access>
<database>semmed</database>
<port>3306</port>
<username>neo4j</username>
<password>Encrypted 2be98afc86aea8b8aae16fa7ae1d3fd89</password>
<servername />
<data_tablespace />
<index_tablespace />
<attributes>
<attribute>
<code>FORCE_IDENTIFIERS_TO_LOWERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>FORCE_IDENTIFIERS_TO_UPPERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>IS_CLUSTERED</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>PORT_NUMBER</code>
<attribute>3306</attribute>
</attribute>
<attribute>
<code>PRESERVE_RESERVED_WORD_CASE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>QUOTE_ALL_FIELDS</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>STREAM_RESULTS</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_BOOLEAN_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_TIMESTAMP_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>USE_POOLING</code>
<attribute>N</attribute>
</attribute>
</attributes>
</connection>
<order>
<hop>
<from>Sort rows</from>
<to>Sorted merge</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Sort rows 2</from>
<to>Sorted merge</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Sorted merge</from>
<to>Unique Nodes</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Unique Nodes</from>
<to>Group by</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Group by</from>
<to>Add constants</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Add constants</from>
<to>Concat fields</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Object Entities</from>
<to>Sort rows</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Subject Entities</from>
<to>Sort rows 2</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Concat fields</from>
<to>Select values</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Select values</from>
<to>Text file output</to>
<enabled>Y</enabled>
</hop>
</order>
<step>
<name>Add constants</name>
<type>Constant</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<fields>
<field>
<name>entity</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<nullif>Entity</nullif>
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>688</xloc>
<yloc>192</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Concat fields</name>
<type>ConcatFields</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<separator>;</separator>
<enclosure />
<enclosure_forced>N</enclosure_forced>
<enclosure_fix_disabled>N</enclosure_fix_disabled>
<header>N</header>
<footer>N</footer>
<format>DOS</format>
<compression>None</compression>
<encoding />
<endedLine />
<fileNameInField>N</fileNameInField>
<fileNameField />
<create_parent_folder>Y</create_parent_folder>
<file>
<name>file</name>
<servlet_output>N</servlet_output>
<do_not_open_new_file_init>Y</do_not_open_new_file_init>
<extention>txt</extention>
<append>N</append>
<split>N</split>
<haspartno>N</haspartno>
<add_date>N</add_date>
<add_time>N</add_time>
<SpecifyFormat>N</SpecifyFormat>
<date_time_format />
<add_to_result_filenames>Y</add_to_result_filenames>
<pad>N</pad>
<fast_dump>N</fast_dump>
<splitevery>0</splitevery>
</file>
<fields>
<field>
<name>entity</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<nullif />
<trim_type>both</trim_type>
<length>-1</length>
<precision>-1</precision>
</field>
<field>
<name>label</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<nullif />
<trim_type>both</trim_type>
<length>-1</length>
<precision>-1</precision>
</field>
</fields>
<ConcatFields>
<targetFieldName>newLabel</targetFieldName>
<targetFieldLength>0</targetFieldLength>
<removeSelectedFields>N</removeSelectedFields>
</ConcatFields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>768</xloc>
<yloc>192</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Group by</name>
<type>GroupBy</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<all_rows>N</all_rows>
<ignore_aggregate>N</ignore_aggregate>
<field_ignore />
<directory>%%java.io.tmpdir%%</directory>
<prefix>grp</prefix>
<add_linenr>N</add_linenr>
<linenr_fieldname />
<give_back_row>N</give_back_row>
<group>
<field>
<name>id</name>
</field>
<field>
<name>name</name>
</field>
<field>
<name>novelty</name>
</field>
</group>
<fields>
<field>
<aggregate>label</aggregate>
<subject>label</subject>
<type>CONCAT_STRING</type>
<valuefield>;</valuefield>
</field>
<field>
<aggregate>semtype</aggregate>
<subject>semtype</subject>
<type>CONCAT_STRING</type>
<valuefield>;</valuefield>
</field>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>624</xloc>
<yloc>192</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Object Entities</name>
<type>TableInput</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<connection>semmed</connection>
<sql>SELECT DISTINCT p.OBJECT_CUI as id
, p.OBJECT_NAME as name
, p.OBJECT_SEMTYPE as semtype
, s.SEMLABEL as label
, cast(p.OBJECT_NOVELTY as char) AS novelty
FROM semmed.PREDICATION p
LEFT OUTER JOIN SEMANTIC_TYPES s
on p.OBJECT_SEMTYPE = s.SEMTYPE</sql>
<limit>0</limit>
<lookup />
<execute_each_row>N</execute_each_row>
<variables_active>N</variables_active>
<lazy_conversion_active>N</lazy_conversion_active>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>144</xloc>
<yloc>112</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Select values</name>
<type>SelectValues</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<fields>
<field>
<name>id</name>
</field>
<field>
<name>name</name>
</field>
<field>
<name>novelty</name>
</field>
<field>
<name>semtype</name>
</field>
<field>
<name>newLabel</name>
<rename>label</rename>
</field>
<select_unspecified>N</select_unspecified>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>864</xloc>
<yloc>192</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Sort rows</name>
<type>SortRows</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<directory>%%java.io.tmpdir%%</directory>
<prefix>out</prefix>
<sort_size>1000000</sort_size>
<free_memory />
<compress>N</compress>
<compress_variable />
<unique_rows>Y</unique_rows>
<fields>
<field>
<name>id</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
<field>
<name>name</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
<field>
<name>semtype</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>336</xloc>
<yloc>128</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Sort rows 2</name>
<type>SortRows</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<directory>%%java.io.tmpdir%%</directory>
<prefix>out</prefix>
<sort_size>1000000</sort_size>
<free_memory />
<compress>N</compress>
<compress_variable />
<unique_rows>Y</unique_rows>
<fields>
<field>
<name>id</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
<field>
<name>name</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
<field>
<name>semtype</name>
<ascending>Y</ascending>
<case_sensitive>N</case_sensitive>
<collator_enabled>N</collator_enabled>
<collator_strength>0</collator_strength>
<presorted>N</presorted>
</field>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>336</xloc>
<yloc>224</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Sorted merge</name>
<type>SortedMerge</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<fields>
<field>
<name>id</name>
<ascending>Y</ascending>
</field>
<field>
<name>name</name>
<ascending>Y</ascending>
</field>
<field>
<name>semtype</name>
<ascending>Y</ascending>
</field>
<field>
<name>label</name>
<ascending>Y</ascending>
</field>
<field>
<name>novelty</name>
<ascending>Y</ascending>
</field>
</fields>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>448</xloc>
<yloc>192</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Subject Entities</name>
<type>TableInput</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<connection>semmed</connection>
<sql>SELECT DISTINCT p.SUBJECT_CUI as id
, p.SUBJECT_NAME as name
, p.SUBJECT_SEMTYPE as semtype
, s.SEMLABEL as label
, cast(p.SUBJECT_NOVELTY as char) AS novelty
FROM semmed.PREDICATION p
LEFT OUTER JOIN SEMANTIC_TYPES s
on p.SUBJECT_SEMTYPE = s.SEMTYPE</sql>
<limit>0</limit>
<lookup />
<execute_each_row>N</execute_each_row>
<variables_active>N</variables_active>
<lazy_conversion_active>N</lazy_conversion_active>
<attributes />