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test_opener.html
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test_opener.html
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<!doctype html>
<html lang="en">
<head>
<!-- Required meta tags -->
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<!-- Bootstrap CSS -->
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css" integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm" crossorigin="anonymous">
<title>Test Opener</title>
</head>
<body>
<!-- Optional JavaScript -->
<!-- jQuery first, then Popper.js, then Bootstrap JS -->
<script src="https://code.jquery.com/jquery-3.2.1.slim.min.js" integrity="sha384-KJ3o2DKtIkvYIK3UENzmM7KCkRr/rE9/Qpg6aAZGJwFDMVNA/GpGFF93hXpG5KkN" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.12.9/umd/popper.min.js" integrity="sha384-ApNbgh9B+Y1QKtv3Rn7W3mgPxhU9K/ScQsAP7hUibX39j7fakFPskvXusvfa0b4Q" crossorigin="anonymous"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/js/bootstrap.min.js" integrity="sha384-JZR6Spejh4U02d8jOt6vLEHfe/JQGiRRSQQxSfFWpi1MquVdAyjUar5+76PVCmYl" crossorigin="anonymous"></script>
<script type="text/javascript">
// <![CDATA[
var editorWindow = null;
var editorPage = "localEditor.html";
var windowName = "open-pedigree";
var sendWhenReady = false;
var localStorageKey = 'pedigreeData';
window.addEventListener('storage', function(storageEvent){
if (storageEvent.storageArea == window.localStorage && storageEvent.key == localStorageKey) {
// the data has been updated
console.log("Got storage event, updating fields");
var data = JSON.parse(storageEvent.newValue);
$("#context").val(data.context);
$("#data").val(data.value);
var FHIRdata = JSON.parse(data.value);
if (FHIRdata){
if (FHIRdata.contained){
for (let containedResource of FHIRdata.contained){
console.log(containedResource)
if (containedResource.id === 'pedigreeImage'){
let svg = decodeURIComponent(escape(atob(containedResource.content.attachment.data)));
var container = document.getElementById("SVGContainer");
container.innerHTML = svg;
break;
}
}
}
}
}
}, false);
function openEditor(element){
console.log("Opening panogram editor in a new window");
var firstChar = '?';
var pageToOpen = editorPage;
var ontologyServer = $("#ontologyServer").val();
if (ontologyServer) {
pageToOpen += firstChar + 'ontologyServer=' + ontologyServer;
firstChar = '&';
}
if($('#sctMode').is(':checked')){
pageToOpen += firstChar + 'mode=SCT';
firstChar = '&';
}
var context = $("#context").val();
var data = $("#data").val();
var pedigreeData = {'value': data, 'context': context};
localStorage.setItem(localStorageKey, JSON.stringify(pedigreeData, null, 2));
editorWindow = window.open(pageToOpen, windowName);
}
function clearData(element){
console.log("Clearing");
$("#context").val("");
$("#data").val("");
$("#SVGContainer").empty();
}
// ]]>
</script>
<h1>Test Opener</h1>
<div class="container-fluid">
<form>
<div class="form-group">
<label for="context">Editor Context</label>
<input type="text" class="form-control" id="context" aria-describedby="contextHelp" placeholder="Enter context">
<small id="contextHelp" class="form-text text-muted">The context is sent to panogram and then returned with saved diagram data.</small>
</div>
<div class="form-group">
<label for="ontologyServer">Ontology Server</label>
<input type="text" class="form-control" id="ontologyServer" aria-describedby="contextHelp" placeholder="Enter Server of leave blank for default">
<small id="ontologyHelp" class="form-text text-muted">The ontology server used to lookup disorders and phenotypes</small>
</div>
<div class="form-group">
<label>Mode</label>
<div class="form-control">
<div class="form-check form-check-inline">
<input class="form-check-input" type="radio" name="mode" id="hpoMode" value="HPO" checked="checked">
<label class="form-check-label active" for="hpoMode">HPO</label>
</div>
<div class="form-check form-check-inline">
<input class="form-check-input" type="radio" name="mode" id="sctMode" value="SCT">
<label class="form-check-label" for="sctMode">SCT</label>
</div>
</div>
<small class="form-text text-muted">Code system to use for disorders and phenotypes. The test example uses HPO, clear the input before changing to SCT</small>
</div>
<div class="form-group">
<label for="data">Data</label>
<textarea class="form-control" id="data" rows="10" readonly>{
"resourceType": "Composition",
"status": "preliminary",
"type": {
"coding": {
"system": "http://loinc.org",
"code": "11488-4",
"display": "Consult note"
}
},
"subject": {
"type": "Patient",
"reference": "#pat"
},
"date": "2019-11-11T11:44:25-10:00",
"title": "Pedigree Details",
"section": [
{
"title": "Patient Condition",
"entry": [
{
"type": "Condition",
"reference": "#cond_0"
},
{
"type": "Condition",
"reference": "#cond_1"
},
{
"type": "Observation",
"reference": "#fmh_clinical_0_0"
}
]
},
{
"title": "Family History",
"code": {
"coding": {
"system": "http://loinc.org",
"code": "10157-6",
"display": "History of family member diseases"
}
},
"entry": [
{
"type": "FamilyMemberHistory",
"reference": "#FMH_0"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_1"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_2"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_3"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_4"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_5"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_6"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_7"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_8"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_9"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_10"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_11"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_12"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_13"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_14"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_15"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_16"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_17"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_18"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_19"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_20"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_21"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_22"
},
{
"type": "FamilyMemberHistory",
"reference": "#FMH_23"
}
]
}
],
"contained": [
{
"id": "pat",
"resourceType": "Patient",
"gender": "female",
"birthDate": "1970-2-10",
"name": [
{
"family": "Smith,",
"given": [
"Jane,"
]
},
{
"use": "old",
"family": "Cooper"
}
]
},
{
"resourceType": "Condition",
"id": "cond_0",
"subject": {
"type": "Patient",
"reference": "#pat"
},
"code": {
"text": "234700"
}
},
{
"resourceType": "Condition",
"id": "cond_1",
"subject": {
"type": "Patient",
"reference": "#pat"
},
"code": {
"text": "234750"
}
},
{
"resourceType": "FamilyMemberHistory",
"id": "FMH_0",
"status": "completed",
"patient": {
"type": "Patient",
"reference": "#pat"
},
"name": "Jane Smith (Cooper)",
"sex": {
"coding": [
{
"system": "http://hl7.org/fhir/administrative-gender",
"code": "female",
"display": "Female"
}
]
},
"relationship": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "ONESELF",
"display": "self"
}
]
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent",
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NMTH",
"display": "natural mother"
}
]
}
},
{
"url": "reference",
"valueReference": {
"reference": "#FMH_1"
}
}
]
},
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent",
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NFTH",
"display": "natural father"
}
]
}
},
{
"url": "reference",
"valueReference": {
"reference": "#FMH_2"
}
}
]
},
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-observation",
"valueReference": {
"type": "Observation",
"reference": "#fmh_clinical_0_0"
}
}
],
"bornDate": "1970-02-10",
"note": [
{
"text": "ONESELF\nTEST"
}
],
"condition": [
{
"code": {
"text": "234700"
}
},
{
"code": {
"text": "234750"
}
}
]
},
{
"resourceType": "Observation",
"id": "fmh_clinical_0_0",
"status": "preliminary",
"valueString": "HP:0012168",
"subject": {
"type": "Patient",
"reference": "#pat"
}
},
{
"resourceType": "FamilyMemberHistory",
"id": "FMH_1",
"status": "completed",
"patient": {
"type": "Patient",
"reference": "#pat"
},
"name": "Mary Cooper (Jordan)",
"sex": {
"coding": [
{
"system": "http://hl7.org/fhir/administrative-gender",
"code": "female",
"display": "Female"
}
]
},
"relationship": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NMTH",
"display": "natural mother"
}
]
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent",
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NMTH",
"display": "natural mother"
}
]
}
},
{
"url": "reference",
"valueReference": {
"reference": "#FMH_17"
}
}
]
},
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent",
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NFTH",
"display": "natural father"
}
]
}
},
{
"url": "reference",
"valueReference": {
"reference": "#FMH_18"
}
}
]
}
],
"bornDate": "1951-08-06",
"note": [
{
"text": "NMTH"
}
]
},
{
"resourceType": "FamilyMemberHistory",
"id": "FMH_2",
"status": "completed",
"patient": {
"type": "Patient",
"reference": "#pat"
},
"name": "Roger Cooper",
"sex": {
"coding": [
{
"system": "http://hl7.org/fhir/administrative-gender",
"code": "male",
"display": "Male"
}
]
},
"relationship": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NFTH",
"display": "natural father"
}
]
},
"bornDate": "1949-03-08",
"note": [
{
"text": "NFTH"
}
]
},
{
"resourceType": "FamilyMemberHistory",
"id": "FMH_3",
"status": "completed",
"patient": {
"type": "Patient",
"reference": "#pat"
},
"name": "Tarzan Smith",
"sex": {
"coding": [
{
"system": "http://hl7.org/fhir/administrative-gender",
"code": "male",
"display": "Male"
}
]
},
"relationship": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "SIGOTHR",
"display": "significant other"
}
]
},
"bornDate": "1967-08-15",
"note": [
{
"text": "SIGOTHR"
}
]
},
{
"resourceType": "FamilyMemberHistory",
"id": "FMH_4",
"status": "completed",
"patient": {
"type": "Patient",
"reference": "#pat"
},
"name": "Bob Smith",
"sex": {
"coding": [
{
"system": "http://hl7.org/fhir/administrative-gender",
"code": "male",
"display": "Male"
}
]
},
"relationship": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "SON",
"display": "natural son"
}
]
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent",
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"code": "NMTH",
"display": "natural mother"
}
]
}
},
{
"url": "reference",
"valueReference": {
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