From 96a18a4d6703d4314018fbe141203c0651cae6b2 Mon Sep 17 00:00:00 2001 From: David Smith Date: Thu, 18 Jan 2024 18:10:00 -0800 Subject: [PATCH] Update _pkgdown.yml --- _pkgdown.yml | 151 ++++++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 149 insertions(+), 2 deletions(-) diff --git a/_pkgdown.yml b/_pkgdown.yml index d71acfb..45dddbd 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -1,4 +1,151 @@ -url: ~ +url: https://dd-harp.github.io/pf.memory/ template: bootstrap: 5 - +navbar: + left: + - text: Functions + href: reference/index.html + - text: Articles + menu: + - text: Force of Infection + href: articles/FoI-TraceFunctions.html + - text: Dynamics + href: articles/Dynamics.html + - text: Multiplicity of Infection + href: articles/MoI.html + right: + - icon: fa-github + href: https://github.com/dd-harp/exDE/ +home: + sidebar: + structure: + - links + - license + - community + - citation + - authors + - dev + - custom_news + components: + custom_news: + title: Changelog + text: News +reference: +- title: Force of Infection + desc: | + Methods to set up FoI trace functions + contents: + - FoI +- subtitle: FoI by Age + desc: | + Specialized methods to compute the FoI by Age + contents: + - par_flatAge +- title: Other Methods + desc: | + Other + contents: + - Bda + - Detect + - Detect.nb + - Detect.pois + - DetectBda + - DetectPM + - DetectPa + - MoIDistPlot + - MoIPM + - Wda + - Wda.delta + - Wda.none + - ageFoI + - ageFoI.flat + - ageFoI.type2 + - alpha2mu + - alpha2mu.W + - alpha2mu.base + - binnedCounts + - binnedCounts.nb + - binnedCounts.pois + - cdfConvolve2 + - cdfConvolve2a + - cdfConvolve2b + - dAoI + - dAoIda + - dAoY + - dAoYN + - dAoYda + - dBda + - dCounts + - dCounts.nb + - dCounts.pois + - dCountsBa + - dCountsPa + - dDensityPa + - dDensityPaConvolve2 + - dDensityPalpha + - dDensityPmu + - dMoIda + - dbeta1 + - dmda + - dpda + - log10RBC + - log10RBC.static + - meanCountsBa + - meanCountsPa + - meanMoI + - momentAoI + - momentAoY + - nzPois + - pAoI + - pAoY + - pAoYN + - pAoY_long + - pBda + - pCounts + - pCounts.nb + - pCounts.pois + - pCountsBa + - pCountsPa + - pDensityPalpha + - pDensityPmu + - par_Wda_delta + - par_Wda_none + - par_alpha2mu.W + - par_alpha2mu_base + - par_expSeason + - par_flatSeason + - par_flatTrend + - par_lRBC_static + - par_nbCounts + - par_poisCounts + - par_sigma_abc + - par_sinSeason + - par_type2Age + - pbeta1 + - qDensityPalpha + - qDensityPmu + - qbeta1 + - rAoI + - rAoY + - rAoYN + - rBda + - rDensityPalpha + - rDensityPmu + - rRda + - rbeta1 + - salpha2mu + - seasonalFoI + - seasonalFoI.exp + - seasonalFoI.flat + - seasonalFoI.sin + - sigma + - sigma.abc + - solveMMinfty + - solve_dAoI + - solve_dAoYda + - solve_dm + - solve_dpda + - trendFoI + - trendFoI.flat + - truePRa + - zda