diff --git a/articles/aqua_basic_files/figure-html/unnamed-chunk-9-1.png b/articles/aqua_basic_files/figure-html/unnamed-chunk-9-1.png index 22b9edf13..cf4733f78 100644 Binary files a/articles/aqua_basic_files/figure-html/unnamed-chunk-9-1.png and b/articles/aqua_basic_files/figure-html/unnamed-chunk-9-1.png differ diff --git a/articles/aqua_trace_files/figure-html/unnamed-chunk-15-1.png b/articles/aqua_trace_files/figure-html/unnamed-chunk-15-1.png index aea56bb49..83bba99d3 100644 Binary files a/articles/aqua_trace_files/figure-html/unnamed-chunk-15-1.png and b/articles/aqua_trace_files/figure-html/unnamed-chunk-15-1.png differ diff --git a/pkgdown.yml b/pkgdown.yml index 7f4bf7c7c..5af58d2fe 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -23,7 +23,7 @@ articles: TraceFunctions: TraceFunctions.html Understanding_ramp.xds: Understanding_ramp.xds.html Working: Working.html -last_built: 2024-10-09T14:55Z +last_built: 2024-10-14T15:17Z urls: reference: https://dd-harp.github.io/ramp.xds/reference article: https://dd-harp.github.io/ramp.xds/articles diff --git a/reference/get_MYZ.html b/reference/get_MYZ.html new file mode 100644 index 000000000..e52c57c80 --- /dev/null +++ b/reference/get_MYZ.html @@ -0,0 +1,171 @@ + +Get MYZ outputs — get_MYZ • ramp.xds + + +
+
+ + + +
+
+
+

Get MYZ outputs

+ Source: R/get.R + +
+ +
+

Get MYZ outputs

+
+ +
+ 
get_MYZ(pars, s = 1)
+
+ +
+

Arguments

+ + +
pars
+

an xds object

+ + +
s
+

the vector species index

+ +
+ +
+ +
+ + +
+ + + + + + + + diff --git a/reference/get_XH.html b/reference/get_XH.html new file mode 100644 index 000000000..491fc4781 --- /dev/null +++ b/reference/get_XH.html @@ -0,0 +1,171 @@ + +Get XH outputs — get_XH • ramp.xds + + +
+
+ + + +
+
+
+

Get XH outputs

+ Source: R/get.R + +
+ +
+

Get XH outputs

+
+ +
+ 
get_XH(pars, i = 1)
+
+ +
+

Arguments

+ + +
pars
+

an xds object

+ + +
i
+

the host species index

+ +
+ +
+ +
+ + +
+ + + + + + + + diff --git a/reference/index.html b/reference/index.html index 44720778c..a71b159ae 100644 --- a/reference/index.html +++ b/reference/index.html @@ -322,6 +322,14 @@

Change Parameters & Initial Values

get_H()

Get the initial values as a vector

+ +

get_XH()

+ +

Get XH outputs

+ +

get_MYZ()

+ +

Get MYZ outputs

make_indices()

diff --git a/sitemap.xml b/sitemap.xml index 07606f226..1acb5fec1 100644 --- a/sitemap.xml +++ b/sitemap.xml @@ -345,6 +345,7 @@ https://dd-harp.github.io/ramp.xds/reference/get_Lpars.basicL.html https://dd-harp.github.io/ramp.xds/reference/get_Lpars.html https://dd-harp.github.io/ramp.xds/reference/get_Lpars.trivial.html +https://dd-harp.github.io/ramp.xds/reference/get_MYZ.html https://dd-harp.github.io/ramp.xds/reference/get_MYZinits.GeRM.html https://dd-harp.github.io/ramp.xds/reference/get_MYZinits.RM_dts.html https://dd-harp.github.io/ramp.xds/reference/get_MYZinits.basicM.html @@ -360,6 +361,7 @@ https://dd-harp.github.io/ramp.xds/reference/get_MYZpars.trivial.html https://dd-harp.github.io/ramp.xds/reference/get_Omega.html https://dd-harp.github.io/ramp.xds/reference/get_Upsilon.html +https://dd-harp.github.io/ramp.xds/reference/get_XH.html https://dd-harp.github.io/ramp.xds/reference/get_Xinits.SIS.html https://dd-harp.github.io/ramp.xds/reference/get_Xinits.hMoI.html https://dd-harp.github.io/ramp.xds/reference/get_Xinits.html