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python-package.yml
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# Workflow is based on the Astropy GitHub actions workflow, ci_workflows.yml
name: CI
on:
push:
branches:
- '*'
tags:
- '*'
pull_request:
jobs:
tests:
name: Unit tests
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: [ubuntu-latest]
python-version: ['3.10'] # , '3.11'] The 3.11 tests take a long time, so skip for now.
numpy-version: ['<1.23'] # , '<2.0'] Need to find a scipy version that works for 3.11 and pre-2.0 numpy
astropy-version: ['<6.1', '<7.0']
env:
# Versions correspond to desimodules/24.6
DESIUTIL_VERSION: '3.4.2'
DESISPEC_VERSION: '0.63.7'
DESITARGET_VERSION: '2.7.0'
DESIMODEL_VERSION: '0.19.1'
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil
python -m pip install git+https://github.com/desihub/desispec.git@${DESISPEC_VERSION}#egg=desispec
python -m pip install git+https://github.com/desihub/desitarget.git@${DESITARGET_VERSION}#egg=desitarget
python -m pip install git+https://github.com/desihub/desimodel.git@${DESIMODEL_VERSION}#egg=desimodel
python -m pip install --upgrade "numpy${{ matrix.numpy-version }}"
python -m pip install --upgrade "astropy${{ matrix.astropy-version }}" 'scipy<1.13' fitsio numba
python -m pip install --editable .[test]
- name: Run the test
run: pytest
coverage:
name: Test coverage
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
numpy-version: ['<1.23']
astropy-version: ['<6.1']
env:
DESIUTIL_VERSION: '3.4.2'
DESISPEC_VERSION: '0.63.7'
DESITARGET_VERSION: '2.7.0'
DESIMODEL_VERSION: '0.19.1'
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil
python -m pip install git+https://github.com/desihub/desispec.git@${DESISPEC_VERSION}#egg=desispec
python -m pip install git+https://github.com/desihub/desitarget.git@${DESITARGET_VERSION}#egg=desitarget
python -m pip install git+https://github.com/desihub/desimodel.git@${DESIMODEL_VERSION}#egg=desimodel
python -m pip install --upgrade "numpy${{ matrix.numpy-version }}"
python -m pip install --upgrade "astropy${{ matrix.astropy-version }}" 'scipy<1.13' fitsio numba
python -m pip install --editable .[coverage]
- name: Run the test with coverage
run: pytest --cov
- name: Coveralls
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
run: coveralls
docs:
name: Doc test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip setuptools wheel Sphinx sphinx-rtd-theme
- name: Test the documentation
run: sphinx-build -W --keep-going -b html doc doc/_build/html
api:
name: API doc completeness test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
env:
DESIUTIL_VERSION: '3.4.2'
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install git+https://github.com/desihub/desiutil.git@${DESIUTIL_VERSION}#egg=desiutil
- name: Generate api.rst
run: desi_api_file --api ./api.rst specprodDB
- name: Compare generated api.rst to checked-in version
run: diff --ignore-space-change --ignore-blank-lines ./api.rst ./doc/api.rst
style:
name: Style check
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ['3.10']
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install Python dependencies
run: python -m pip install --upgrade pip setuptools wheel pycodestyle
- name: Test the style
# Uncomment continue-on-error to allow failures.
# continue-on-error: true
run: pycodestyle --count py/specprodDB