Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
For the related manuscript, see Diaz-Papkovich, Alex, Luke Anderson-Trocmé, Chief Ben-Eghan, and Simon Gravel. "UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts." PLoS genetics 15.11 (2019): e1008432. https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008432