install_and_test.yml

# This workflow will setup conda, create a virtual environment with required packages and dependencies,
# execute script utils/create_test_files.py,
# and run tests with pytest

name: Install and run tests

on:
  push:
    branches: [ "main", "dev" ]
  pull_request:
    branches: [ "main", "dev" ]

#permissions:
#  contents: read

jobs:
  build:
    name: Install and test on (${{ matrix.os }}, Miniforge)
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: ["ubuntu-latest"]
        python-version: ["3.11.5"]
    defaults:
      run:
        shell: bash -el {0}
    steps:
    - uses: actions/checkout@v4
    - name: Setup conda environment
      uses: conda-incubator/setup-miniconda@v3
      with:
        auto-update-conda: false
        python-version: ${{ matrix.python-version }}
        environment-file: environment_dev.yaml
        activate-environment: oac
        miniforge-version: latest
    - name: Conda info
      run: |
        conda info
        conda list
    - name: Set PYTHONPATH variable
      run: |
        PYTHONPATH="$GITHUB_WORKSPACE/utils:$GITHUB_WORKSPACE/tests:$PYTHONPATH"
        echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV
        echo $GITHUB_ENV
    - name: Create test files
      run: |
        cd utils/
        chmod a+x create_test_files.py
        python create_test_files.py
        cd ..
    - name: Test with pytest
      run: |
        cd tests/
        pytest