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hdf5_read_write.f90
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module hdf5_read_write
use bl_types
use hdf5
implicit none
logical, public :: hyperslab_group_master
public :: write_ray_hyperslab
private :: write_ray_hyperslab_dbl_2d
private :: write_ray_hyperslab_dbl_3d
private :: write_ray_hyperslab_dbl_4d
private :: write_ray_hyperslab_dbl_5d
private :: write_ray_hyperslab_int_3d
public :: write_1d_slab
private :: write_1d_slab_int
private :: write_1d_slab_double
private :: write_1d_slab_string
public :: write_2d_slab
private :: write_2d_slab_double
private :: write_2d_slab_int
public :: read_ray_hyperslab
private :: read_ray_hyperslab_dbl_2d
private :: read_ray_hyperslab_dbl_3d
private :: read_ray_hyperslab_dbl_4d
private :: read_ray_hyperslab_dbl_5d
private :: read_ray_hyperslab_int_3d
public :: read_1d_slab
private :: read_1d_slab_int
private :: read_1d_slab_double
private :: read_1d_slab_string
public :: read_2d_slab
private :: read_2d_slab_int
private :: read_2d_slab_double
interface write_ray_hyperslab
module procedure write_ray_hyperslab_int_3d
module procedure write_ray_hyperslab_dbl_2d
module procedure write_ray_hyperslab_dbl_3d
module procedure write_ray_hyperslab_dbl_4d
module procedure write_ray_hyperslab_dbl_5d
end interface write_ray_hyperslab
interface write_1d_slab
module procedure write_1d_slab_int
module procedure write_1d_slab_double
module procedure write_1d_slab_string
end interface write_1d_slab
interface write_2d_slab
module procedure write_2d_slab_double
module procedure write_2d_slab_int
end interface write_2d_slab
interface read_ray_hyperslab
module procedure read_ray_hyperslab_int_3d
module procedure read_ray_hyperslab_dbl_2d
module procedure read_ray_hyperslab_dbl_3d
module procedure read_ray_hyperslab_dbl_4d
module procedure read_ray_hyperslab_dbl_5d
end interface read_ray_hyperslab
interface read_1d_slab
module procedure read_1d_slab_int
module procedure read_1d_slab_double
module procedure read_1d_slab_string
end interface read_1d_slab
interface read_2d_slab
module procedure read_2d_slab_int
module procedure read_2d_slab_double
end interface read_2d_slab
contains
subroutine write_1d_slab_int(name, value, group_id, datasize, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
integer, dimension(:), intent(in) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(1, datasize, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_integer, &
dataspace_id, dataset_id, error)
if(hyperslab_group_master) &
call h5dwrite_f(dataset_id, h5t_native_integer, &
value, datasize, error)
call h5sclose_f(dataspace_id, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
end subroutine write_1d_slab_int
subroutine write_1d_slab_double(name, value, group_id, datasize, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
real(dp_t), dimension(:), intent(in) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(1, datasize, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, &
dataspace_id, dataset_id, error)
if(hyperslab_group_master) &
call h5dwrite_f(dataset_id, h5t_native_double, &
value, datasize, error)
call h5sclose_f(dataspace_id, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
end subroutine write_1d_slab_double
subroutine write_1d_slab_string(name, value, strlen, group_id, datasize, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer :: strlen
integer(hsize_t) :: sizechar
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
character(len=strlen), dimension(:), intent(in) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(1, datasize, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
sizechar = strlen
call h5tset_size_f(h5t_native_character, sizechar, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5dcreate_f(group_id, name, h5t_native_character, &
dataspace_id, dataset_id, error)
if(hyperslab_group_master) &
call h5dwrite_f(dataset_id, h5t_native_character, &
value, datasize, error)
call h5sclose_f(dataspace_id, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
end subroutine write_1d_slab_string
subroutine write_2d_slab_double(name, value, group_id, datasize, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: datasize
real(dp_t), dimension(:,:), intent(in) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(2, datasize, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, &
dataspace_id, dataset_id, error)
if(hyperslab_group_master) &
call h5dwrite_f(dataset_id, h5t_native_double, &
value, datasize, error)
call h5sclose_f(dataspace_id, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
end subroutine write_2d_slab_double
subroutine write_2d_slab_int(name, value, group_id, datasize, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: datasize
integer, dimension(:,:), intent(in) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(2, datasize, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_integer, &
dataspace_id, dataset_id, error)
if(hyperslab_group_master) &
call h5dwrite_f(dataset_id, h5t_native_integer, &
value, datasize, error)
call h5sclose_f(dataspace_id, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
end subroutine write_2d_slab_int
subroutine write_ray_hyperslab_dbl_2d(name, value, group_id, &
global_datasize, local_datasize, slab_offset, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: global_datasize
integer(hsize_t), dimension(2), intent(in) :: local_datasize
integer(hsize_t), dimension(2), intent(in) :: slab_offset
real(dp_t), dimension(:,:), intent(in) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: plist_id
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(2, global_datasize, filespace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, filespace, &
dataset_id, error)
call h5sclose_f(filespace, error)
call h5screate_simple_f(2, local_datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
local_datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5pcreate_f(h5p_dataset_xfer_f, plist_id, error)
! select case(hdf_mpio_mode)
! case (1)
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! case (2)
call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_collective_f, error)
! case default
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! end select
call h5dwrite_f(dataset_id, h5t_native_double, value, local_datasize, &
error, file_space_id=filespace, mem_space_id=memspace, &
xfer_prp=plist_id)
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
call h5pclose_f(plist_id, error)
end subroutine write_ray_hyperslab_dbl_2d
subroutine write_ray_hyperslab_dbl_3d(name, value, group_id, &
global_datasize, local_datasize, slab_offset, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(3), intent(in) :: global_datasize
integer(hsize_t), dimension(3), intent(in) :: local_datasize
integer(hsize_t), dimension(3), intent(in) :: slab_offset
real(dp_t), dimension(:,:,:), intent(in) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: plist_id
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(3, global_datasize, filespace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, filespace, &
dataset_id, error)
call h5sclose_f(filespace, error)
call h5screate_simple_f(3, local_datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
local_datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5pcreate_f(h5p_dataset_xfer_f, plist_id, error)
! select case(hdf_mpio_mode)
! case (1)
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! case (2)
call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_collective_f, error)
! case default
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! end select
call h5dwrite_f(dataset_id, h5t_native_double, value, local_datasize, &
error, file_space_id=filespace, mem_space_id=memspace, &
xfer_prp=plist_id)
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
call h5pclose_f(plist_id, error)
end subroutine write_ray_hyperslab_dbl_3d
subroutine write_ray_hyperslab_dbl_4d(name, value, group_id, &
global_datasize, local_datasize, slab_offset, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(4), intent(in) :: global_datasize
integer(hsize_t), dimension(4), intent(in) :: local_datasize
integer(hsize_t), dimension(4), intent(in) :: slab_offset
real(dp_t), dimension(:,:,:,:), intent(in) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: plist_id
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(4, global_datasize, filespace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, filespace, &
dataset_id, error)
call h5sclose_f(filespace, error)
call h5screate_simple_f(4, local_datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
local_datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5pcreate_f(h5p_dataset_xfer_f, plist_id, error)
! select case(hdf_mpio_mode)
! case (1)
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! case (2)
call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_collective_f, error)
! case default
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! end select
call h5dwrite_f(dataset_id, h5t_native_double, value, local_datasize, &
error, file_space_id=filespace, mem_space_id=memspace, &
xfer_prp=plist_id)
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
call h5pclose_f(plist_id, error)
end subroutine write_ray_hyperslab_dbl_4d
subroutine write_ray_hyperslab_dbl_5d(name, value, group_id, &
global_datasize, local_datasize, slab_offset, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(5), intent(in) :: global_datasize
integer(hsize_t), dimension(5), intent(in) :: local_datasize
integer(hsize_t), dimension(5), intent(in) :: slab_offset
real(dp_t), dimension(:,:,:,:,:), intent(in) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: plist_id
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(5, global_datasize, filespace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_double, filespace, &
dataset_id, error)
call h5sclose_f(filespace, error)
call h5screate_simple_f(5, local_datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
local_datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5pcreate_f(h5p_dataset_xfer_f, plist_id, error)
! select case(hdf_mpio_mode)
! case (1)
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! case (2)
call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_collective_f, error)
! case default
! call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
! end select
call h5dwrite_f(dataset_id, h5t_native_double, value, local_datasize, &
error, file_space_id=filespace, mem_space_id=memspace, &
xfer_prp=plist_id)
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
call h5pclose_f(plist_id, error)
end subroutine write_ray_hyperslab_dbl_5d
subroutine write_ray_hyperslab_int_3d(name, value, group_id, &
global_datasize, local_datasize, slab_offset, &
desc_option, unit_option)
character(*), intent(in) :: name
character(*), intent(in), optional :: unit_option
character(*), intent(in), optional :: desc_option
integer(hid_t) :: group_id
integer(hsize_t), dimension(3), intent(in) :: global_datasize
integer(hsize_t), dimension(3), intent(in) :: local_datasize
integer(hsize_t), dimension(3), intent(in) :: slab_offset
integer, dimension(:,:,:), intent(in) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: plist_id
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hid_t) :: atype_id
integer(hid_t) :: attr_id
integer(size_t) :: attr_len
integer(hsize_t), dimension(1) :: adims = (/1/)
integer :: error
call h5screate_simple_f(3, global_datasize, filespace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dcreate_f(group_id, name, h5t_native_integer, filespace, &
dataset_id, error)
call h5sclose_f(filespace, error)
call h5screate_simple_f(3, local_datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
local_datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5pcreate_f(h5p_dataset_xfer_f, plist_id, error)
!!select case(hdf_mpio_mode)
!case (1)
!call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
!case (2)
call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_collective_f, error)
!case default
!call h5pset_dxpl_mpio_f(plist_id, h5fd_mpio_independent_f, error)
!end select
call h5dwrite_f(dataset_id, h5t_native_integer, value, local_datasize, &
error, file_space_id=filespace, mem_space_id=memspace, &
xfer_prp=plist_id)
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
if(present(desc_option))then
attr_len = len(desc_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'desc', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, desc_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
if(present(unit_option))then
attr_len = len(unit_option)
call h5screate_simple_f(1, adims, dataspace_id, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5tcopy_f(h5t_native_character, atype_id, error)
call h5tset_size_f(atype_id, attr_len, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5acreate_f(dataset_id, 'unit', atype_id, dataspace_id, &
attr_id, error)
if(hyperslab_group_master) &
call h5awrite_f(attr_id, atype_id, unit_option, adims, error)
call h5aclose_f(attr_id, error)
call h5sclose_f(dataspace_id, error)
end if
call h5dclose_f(dataset_id, error)
call h5pclose_f(plist_id, error)
end subroutine write_ray_hyperslab_int_3d
subroutine read_1d_slab_int(name, value, group_id, datasize)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
integer, dimension(:), intent(out) :: value
integer(hid_t) :: dataset_id
integer :: error
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dread_f(dataset_id, h5t_native_integer, &
value, datasize, error)
if ( error /= 0 ) print *,'Could not read: '//name
call h5dclose_f(dataset_id, error)
end subroutine read_1d_slab_int
subroutine read_1d_slab_double(name, value, group_id, datasize)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
real(dp_t), dimension(:), intent(out) :: value
integer(hid_t) :: dataset_id
integer :: error
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dread_f(dataset_id, h5t_native_double, &
value, datasize, error)
if ( error /= 0 ) print *,'Could not read: '//name
call h5dclose_f(dataset_id, error)
end subroutine read_1d_slab_double
subroutine read_1d_slab_string(name, value, strlen, group_id, datasize)
character(*), intent(in) :: name
integer, intent(in) :: strlen
integer(hid_t) :: group_id
integer(hsize_t), dimension(1), intent(in) :: datasize
character(len=strlen), dimension(:), intent(out) :: value
integer(hid_t) :: dataset_id
integer(hid_t) :: dataspace_id
integer(hsize_t) :: sizechar
integer :: error
sizechar = strlen
call h5tset_size_f(h5t_native_character, sizechar, error)
if ( error /= 0 ) print *,'Could not set size for: '//name
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dread_f(dataset_id, h5t_native_character, &
value, datasize, error)
if ( error /= 0 ) print *,'Could not read: '//name
call h5dclose_f(dataset_id, error)
end subroutine read_1d_slab_string
subroutine read_2d_slab_int(name, value, group_id, datasize)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: datasize
integer, dimension(:,:), intent(out) :: value
integer(hid_t) :: dataset_id
integer :: error
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dread_f(dataset_id, h5t_native_integer, &
value, datasize, error)
if ( error /= 0 ) print *,'Could not read: '//name
call h5dclose_f(dataset_id, error)
end subroutine read_2d_slab_int
subroutine read_2d_slab_double(name, value, group_id, datasize)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: datasize
real(dp_t), dimension(:,:), intent(out) :: value
integer(hid_t) :: dataset_id
integer :: error
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dread_f(dataset_id, h5t_native_double, &
value, datasize, error)
if ( error /= 0 ) print *,'Could not read: '//name
call h5dclose_f(dataset_id, error)
end subroutine read_2d_slab_double
subroutine read_ray_hyperslab_dbl_2d(name, value, group_id, &
datasize, slab_offset)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(2), intent(in) :: datasize
integer(hsize_t), dimension(2), intent(in) :: slab_offset
real(dp_t), dimension(:,:), intent(out) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: dataset_id
integer(hsize_t), dimension(2) :: null_offset
integer :: error
null_offset = 0
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5screate_simple_f(2, datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5sselect_hyperslab_f(memspace, h5s_select_set_f, null_offset, &
datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5dread_f(dataset_id, h5t_native_double, value, datasize, &
error, file_space_id=filespace, mem_space_id=memspace)
if ( error /= 0 ) print *,'Could not read: '//name
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
call h5dclose_f(dataset_id, error)
end subroutine read_ray_hyperslab_dbl_2d
subroutine read_ray_hyperslab_dbl_3d(name, value, group_id, &
datasize, slab_offset)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(3), intent(in) :: datasize
integer(hsize_t), dimension(3), intent(in) :: slab_offset
real(dp_t), dimension(:,:,:), intent(out) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: dataset_id
integer(hsize_t), dimension(3) :: null_offset
integer :: error
null_offset = 0
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dget_space_f(dataset_id, filespace, error)
if ( error /= 0 ) print *,'Could not get space: '//name
call h5sselect_hyperslab_f(filespace, h5s_select_set_f, slab_offset, &
datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5screate_simple_f(3, datasize, memspace, error)
if ( error /= 0 ) print *,'Could not create simple: '//name
call h5sselect_hyperslab_f(memspace, h5s_select_set_f, null_offset, &
datasize, error)
if ( error /= 0 ) print *,'Could not select hyperslab: '//name
call h5dread_f(dataset_id, h5t_native_double, value, datasize, &
error, file_space_id=filespace, mem_space_id=memspace)
if ( error /= 0 ) print *,'Could not read: '//name
call h5sclose_f(filespace, error)
call h5sclose_f(memspace, error)
call h5dclose_f(dataset_id, error)
end subroutine read_ray_hyperslab_dbl_3d
subroutine read_ray_hyperslab_dbl_4d(name, value, group_id, &
datasize, slab_offset)
character(*), intent(in) :: name
integer(hid_t) :: group_id
integer(hsize_t), dimension(4), intent(in) :: datasize
integer(hsize_t), dimension(4), intent(in) :: slab_offset
real(dp_t), dimension(:,:,:,:), intent(out) :: value
integer(hid_t) :: filespace
integer(hid_t) :: memspace
integer(hid_t) :: dataset_id
integer(hsize_t), dimension(4) :: null_offset
integer :: error
null_offset = 0
call h5dopen_f(group_id, name, dataset_id, error)
if ( error /= 0 ) print *,'Could not open: '//name
call h5dget_space_f(dataset_id, filespace, error)