This repo contains the source code of phylip, written by Joe Felsenstein et al., and downloaded on January 8, 2021 from https://evolution.genetics.washington.edu/phylip/getme-new1.html .
Generally builds on https://evolution.genetics.washington.edu/phylip/install.html .
docker run -it dunnlab/ubuntu-dev:20.04 /bin/bash
git clone https://github.com/dunnlab/phylip.git
cd phylip/phylip-3.697/src/
make -f Makefile.unx install
export PATH="/phylip/phylip-3.697/exe:$PATH"
I include a few datasets
test.phyis from the dnaml documetnationsiph16s.phyis a quick siphonophore dataset I madealignment.phyis from this primer
To run a test datasets:
cd /phylip
dnaml
Then enter the name of the dataset.
Further reading
# in linux container dunnlab/ubuntu-dev
cd phylip-3.697/src
make --file=Makefile.unx dnaml
cd ../../
ln -s siph16s.phy infile
phylip-3.697/src/dnaml
gprof -b phylip-3.697/src/dnaml gmon.out
gprof phylip-3.697/src/dnaml gmon.out > gmon.txt