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links.php
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html><!-- InstanceBegin template="/Templates/default.dwt.php" codeOutsideHTMLIsLocked="false" -->
<head>
<!-- InstanceBeginEditable name="doctitle" -->
<title>Ontofox</title>
<!-- InstanceEndEditable --><meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<link rel="shortcut icon" href="/favicon.ico" />
<link href="styleMain.css" rel="stylesheet" type="text/css">
<!-- InstanceBeginEditable name="head" --><!-- InstanceEndEditable -->
</head>
<body>
<div id="topbanner"><a href="/index.php"><img src="Images/logo.gif" alt="Logo" width="280" height="50" border="0"></a></div>
<div id="topnav"><a href="index.php" class="topnav">Home</a><a href="introduction.php" class="topnav">Introduction</a><a href="tutorial/index.php" class="topnav">Tutorial</a><a href="faqs.php" class="topnav">FAQs</a><a href="references.php" class="topnav">References</a><a href="download.php" class="topnav">Download</a><a href="links.php" class="topnav">Links</a><a href="contactus.php" class="topnav">Contact</a><a href="acknowledge.php" class="topnav">Acknowledge</a><a href="news.php" class="topnav">News</a></div>
<div id="mainbody">
<!-- InstanceBeginEditable name="Main" -->
<h3 class="head3_darkred">Links</h3>
<p><strong>Biomedical Ontologies: </strong></p>
<p> Ontologies in OBO Foundry: <a href="http://www.obofoundry.org">http://www.obofoundry.org</a></p>
<p>CARO: Common Anatomy Reference Ontology: <a href="http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro">http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro</a></p>
<p>CHEBI: Chemical Entities of Biological Interest: <a href="http://chebi.wiki.sourceforge.net/">http://chebi.wiki.sourceforge.net/</a></p>
<p>CL: Cell Type Ontology: <a href="http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell">http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell</a></p>
<p>DOID: Human Disease Ontology: <a href="http://diseaseontology.sourceforge.net/">http://diseaseontology.sourceforge.net/</a></p>
<p>ENVO: Environment Ontology: <a href="http://environmentontology.org/">http://environmentontology.org/</a></p>
<p>GO: Gene Ontology: <a href="http://www.geneontology.org">http://www.geneontology.org</a></p>
<p>IDO: Infectious Disease Ontology: <a href="http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology">http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology</a></p>
<p>NCBITaxon: NCBI Taxonomy: <a href="http://www.ncbi.nlm.nih.gov/Taxonomy/">http://www.ncbi.nlm.nih.gov/Taxonomy/</a></p>
<p>MP: Mammalian Phenotype Ontology: <a href="http://www.informatics.jax.org/searches/MP_form.shtml">http://www.informatics.jax.org/searches/MP_form.shtml</a></p>
<p>OBI: Ontology for Biomedical Investigations: <a href="http://obi-ontology.org/">http://obi-ontology.org</a></p>
<p>PATO: Phenotypic Quality Ontology: <a href="http://www.obofoundry.org/cgi-bin/detail.cgi?id=quality">http://www.obofoundry.org/cgi-bin/detail.cgi?id=quality</a></p>
<p>PRO: Protein Ontology: <a href="http://www.obofoundry.org/cgi-bin/detail.cgi?id=protein">http://www.obofoundry.org/cgi-bin/detail.cgi?id=protein</a></p>
<p>SO: Sequence Ontology: <a href="http://www.sequenceontology.org/">http://www.sequenceontology.org/</a></p>
<p>VO: Vaccine Ontology: <a href="http://www.violinet.org/vaccineontology">http://www.violinet.org/vaccineontology</a></p>
<p> </p>
<p><strong>Tools: </strong></p>
<p> Protege ontology editor: <a href="http://protege.stanford.edu/">http://protege.stanford.edu/</a></p>
<p>NCBO BioPortal: <a href="http://bioportal.bioontology.org/">http://bioportal.bioontology.org/</a></p>
<p>VO Browser: <a href="http://www.ontobee.org/browser/index.php?o=VO">http://www.ontobee.org/browser/index.php?o=VO</a> (Note: VO uses Ontofox for its own development. For example, ~400 NCBITaxon and ~300 MP terms and their annotations have been imported into VO using Ontofox.) </p>
<p>OWLAPI: <a href="http://owlapi.sourceforge.net/">http://owlapi.sourceforge.net/</a> </p>
<p> </p>
<p><strong>Ontofox Tutorials:</strong></p>
<p><a href="http://sivsmusings.wordpress.com/2010/10/18/day-4-infective-endocarditis-microbiology/">Sivaram's short tutorial on using Ontofox</a> </p>
<p> </p>
<!-- InstanceEndEditable --></div>
<div id="footer">
<div id="footer_hl"></div>
<table width="100%" border="0" cellspacing="0" cellpadding="0">
<tr>
<td><div id="footer_left"><a href="http://www.hegroup.org" target="_blank">He Group</a><br>
University of Michigan Medical School<br>
Ann Arbor, MI 48109</div></td>
<td width="300"><div id="footer_right"><a href="http://www.umich.edu" target="_blank"><img src="Images/wordmark_m_web.jpg" alt="UM Logo" width="166" height="20" border="0"></a></div></td>
</tr>
</table>
</div>
<script type="text/javascript">
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
</script>
<script type="text/javascript">
try {
var pageTracker = _gat._getTracker("UA-4869243-8");
pageTracker._trackPageview();
} catch(err) {}</script>
</body>
<!-- InstanceEnd --></html>