From 3b4fe39b7cdc3748f612872832b293cf075dfabd Mon Sep 17 00:00:00 2001
From: Arun <“arun.karnani.k@gmail.com”>
Date: Fri, 23 Aug 2024 16:39:50 +0100
Subject: [PATCH] tso500_vep_config_v1.2.9.json ->
 tso500_vep_config_v1.2.10.json

TSO500_vep_config file was renamed by using git mv to increase version in the filename (i.e. from v1.2.9 to v1.2.10). Within the file:
- config_version was updated from v1.2.9 to v1.2.10
- ClinVar files file_id and index_id were updated to point to the most recent ClinVar annotation files (file-Gq1Y1q04pZJXkF96B908F6JY and file-Gq1Y2P049Kp2Jq880x258qqG)
- README file was updated to point to the correct ClinVar files.
---
 README.md                                                   | 2 +-
 ...vep_config_v1.2.9.json => tso500_vep_config_v1.2.10.json | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)
 rename tso500_vep_config_v1.2.9.json => tso500_vep_config_v1.2.10.json (96%)

diff --git a/README.md b/README.md
index 9c88459..135bff1 100644
--- a/README.md
+++ b/README.md
@@ -21,7 +21,7 @@ This json file provides information about annotations,plugins, required fields a
   * Homo_sapiens.GRCh37.dna.toplevel.fa.gz.gzi
   * hs37d5.fasta-index.tar.gz
 * Custom Annotation sources:
-  * clinvar_20240708_GRCh37.vcf.gz
+  * clinvar_20240813_GRCh37.vcf.gz
   * gnomad.genomes.r2.0.1.sites.noVEP_normalised_decomposed_PASS.vcf.gz
   * gnomad.exomes.r2.0.2.sites.noVEP_normalised_decomposed_PASS.vcf.gz
 * Plugin annotations:
diff --git a/tso500_vep_config_v1.2.9.json b/tso500_vep_config_v1.2.10.json
similarity index 96%
rename from tso500_vep_config_v1.2.9.json
rename to tso500_vep_config_v1.2.10.json
index 13d5545..985c6a9 100644
--- a/tso500_vep_config_v1.2.9.json
+++ b/tso500_vep_config_v1.2.10.json
@@ -2,7 +2,7 @@
     "config_information":{
         "genome_build": "GRCh37",
         "assay":"TSO500",
-        "config_version": "1.2.9"
+        "config_version": "1.2.10"
     },
         "vep_resources":{
         "vep_docker":"file-G8V2Vz0433Gp5bYPF2f6vg9X",
@@ -23,8 +23,8 @@
         "required_fields":"ClinVar,ClinVar_CLNSIG,ClinVar_CLNSIGCONF,ClinVar_CLNDN",
         "resource_files": [
           {
-          "file_id":"file-GpBQGV04bjFyff7J639Gf748",
-          "index_id":"file-GpBQKKj46v4qkxvQ92P7q2z6"
+          "file_id":"file-Gq1Y1q04pZJXkF96B908F6JY",
+          "index_id":"file-Gq1Y2P049Kp2Jq880x258qqG"
           }
         ]
       },