diff --git a/.github/workflows/pytest.yaml b/.github/workflows/pytest.yaml index 7076c43..1568b92 100644 --- a/.github/workflows/pytest.yaml +++ b/.github/workflows/pytest.yaml @@ -16,6 +16,9 @@ jobs: pip install pipenv codecov pip install -r requirements.txt pipenv install --dev + - name: gunzip data + run: | + gunzip tests/test_data/*.gz - name: Test with pytest run: | pytest -vv --cov . --cov scripts/ --cov utils/ \ No newline at end of file diff --git a/tests/test_data/GCF_000001405.25_GRCh37.p13_genomic.gff.gz b/tests/test_data/GCF_000001405.25_GRCh37.p13_genomic.gff.gz new file mode 100644 index 0000000..eaade63 Binary files /dev/null and b/tests/test_data/GCF_000001405.25_GRCh37.p13_genomic.gff.gz differ diff --git a/tests/test_data/refseq_gff_preprocessed.pkl.gz b/tests/test_data/refseq_gff_preprocessed.pkl.gz new file mode 100644 index 0000000..bd9f83d Binary files /dev/null and b/tests/test_data/refseq_gff_preprocessed.pkl.gz differ