MA Japan - YOSHINAGA

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Project short name:

SchizoAstroLeonVisium

Primary Wrangler:

Secondary Wrangler:

Associated files

• Google Drive:
• ingest: 2b429ba3-88be-49b7-9f5d-f9158016b2e0

Published study links

• pre-print: 10.1101/2024.06.27.601103
• Accessioned data: synapse

Key Events

• Convert published metadata to HCA spreadsheet
• Manually curate dataset to meet HCA metadata standard
• Collect any matrix and cell-type annotation files
• Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• Upload sheet to validate metadata
• Transfer raw files to ingest to validate data files
• Check linking using ingest graph validator
• Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• Submit dataset to Production
• Complete the Export SOP
• Convert project data to SCEA format following the SCEA conversion SOP if appropriate

Please track the below as well as the key events:

1. Track date first spreadsheet received and final spreadsheet sent by editing ticket to include
   date next to event.
2. Track spreadsheet iterations by placing asterisks next to receive spreadsheet event.
3. Track any metadata issues/tickets made for dataset with a bulleted list of links under
   received spreadsheet event. Links should be to the ticket in the metadata repo.

[arschat]

wait until #1249 is completed before we accept new MA submissions

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