usecases-info.json

[
  {
    "title": "Trace Analysis",
    "id": "traceanalysis",
    "usecases": [
      {
        "id": "featureExtraction",
        "title": "NeuroFeatureExtract",
        "description": "Extracts electrophysiological features; traces can be from HBP/EBRAINS or uploaded",
        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "disabled": false,
        "implementation": "webapp",
        "contributors": [
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Roberto Smiriglia", "email": "roberto.smiriglia@ibf.cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/traceanalysis/features.png"
        },
        "dataProtected": true,
        "externalUrl": "https://hhnb.ebrains-italy.eu/efelg/",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/cls-video-tutorial/NFE/NFE_video_tutorial_v01.mp4"
      },
      {
        "id": "synapticEventsFitting",
        "title": "Synaptic events fitting",
        "description": "Fitting synaptic events using data and model in NeuroInformatics Platform",
        "experience": ["power"],
        "access": ["hpc"],
        "maturity": ["beta"],
        "disabled": false,
        "implementation": "ipynb",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Roberto Smiriglia", "email": "roberto.smiriglia@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/traceanalysis/bestfit.png"
        },
        "dataProtected": true,
        "notebookPath": "Synaptic events fitting.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Synaptic_Events_Fitting&branch=main",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/SynapticEventsFitting/index.html"
      },
      {
        "id": "simplifiedSynapticEventsFitting",
        "title": "Simplified synaptic events fitting",
        "description": "Fitting synaptic events using data and model in NeuroInformatics Platform",
        "experience": ["power"],
        "access": ["hpc"],
        "maturity": ["beta"],
        "disabled": true,
        "implementation": "ipynb",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Roberto Smiriglia", "email": "roberto.smiriglia@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/traceanalysis/bestfit.png"
        },
        "dataProtected": true,
        "notebookPath": "Synaptic events fitting.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Simplified_Synaptic_Events_Fitting&branch=main",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/SynapticEventsFitting/index.html"
      },
      {
        "id": "synapticEventsFittingUserModel",
        "title": "Synaptic events fitting with user model",
        "description": "Fitting synaptic events using data in NeuroInformatics Platform and user's model",
        "experience": ["experts"],
        "access": ["hpc"],
        "maturity": ["beta"],
        "disabled": false,
        "implementation": "ipynb",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "picture": {
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        },
        "dataProtected": true,
        "notebookPath": "Synaptic events fitting with user model.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Synaptic_Events_Fitting_User_Model&branch=main",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/SynapticEventsFittingWithUserModel/index.html"
      },
      {
        "id": "synapticEventsFittingUserData",
        "title": "Synaptic events fitting with user data",
        "description": "Fitting user's synaptic events data with model from NeuroInformatics Platform",
        "experience": ["experts"],
        "access": ["hpc"],
        "maturity": ["beta"],
        "disabled": false,
        "implementation": "ipynb",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/traceanalysis/bestfit.png"
        },
        "dataProtected": true,
        "notebookPath": "Synaptic events fitting with user data.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Synaptic_Events_Fitting_User_Data&branch=main",
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      }
    ]
  },
  {
    "title": "Single Cell Modeling",
    "id": "singlecellmodeling",
    "usecases": [
      {
        "id": "hodgkinHuxleyNeuronBuilder",
        "title": "Hodgkin-Huxley Neuron Builder",
        "description": "Use the eFEL and BluePyOpt libraries to go through the entire neuron builder pipeline: 1) feature extraction, 2) model optimization, 3) simulation.",
        "experience": ["all"],
        "access": ["hpc"],
        "maturity": ["beta"],
        "disabled": false,
        "implementation": "webapp",
        "dataProtected": true,
        "contributors": [
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/hhnb.png"
        },
        "externalUrl": "https://hhnb.ebrains-italy.eu/hh-neuron-builder/",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/HodgkinHuxleyNeuronBuilder/index.html"
      },
      {
        "id": "buildHippocampalCellModel",
        "title": "Build your own single hippocampal cell model using HBP data",
        "description": "Use the BluePyOpt to run an optimization choosing from HBP data for morphology, channel kinetics, features, and parameters.",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Roberto Smiriglia", "email": "roberto.smiriglia@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "maturity": ["beta"],
        "experience": ["power"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/objectives.png"
        },
        "dataProtected": true,
        "notebookPath": "BuildOwn Single HippoCell - Config.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/BuildOwn_Single_HippoCell&branch=main",
        "chooseModel": false
      },
      {
        "id": "rebuildHippocampalCellModel",
        "title": "Rebuild an existing single hippocampal cell model",
        "description": "Use the BluePyOpt to re-run an optimization with your choices for the parameters range",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Roberto Smiriglia", "email": "roberto.smiriglia@ibf.cnr.it" },
          { "name": "Luca Leonardo Bologna", "email": "lucaleonardo.bologna@cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "maturity": ["beta"],
        "experience": ["power"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/objectives.png"
        },
        "dataProtected": false,
        "chooseModel": true,
        "notebookPath": "Rebuild Single HippoCell - Config.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Rebuild_Single_HippoCell&branch=main"
      },
      {
        "id": "synapticPlasticity",
        "title": "Synaptic plasticity",
        "description": "Configure and test different synaptic plasticity models and protocols",
        "contributors": [
          { "name": "Carmen Alina Lupascu", "email": "carmen.lupascu@ibf.cnr.it" },
          { "name": "Dario Curreri", "email": "dario.curreri@ibf.cnr.it" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/Plasticity2.png"
        },
        "dataProtected": false,
        "chooseModel": true,
        "notebookPath": "Synaptic plasticity.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Synaptic_Plasticity&branch=main"
      },
      {
        "id": "cerebellumGrCMono",
        "title": "Mono compartmental Cerebellar Granule cell optimization",
        "description": "Using BluePyOpt to optimize a single compartmental cerebellar granule cell. All the parameters, channels and morphology can be modified. This version runs directly on the Collaboratory and it is limited to small optimization.",
        "contributors": [
          { "name": "Stefano Masoli", "email": "stefano.masoli@unipv.it" },
          { "name": "Martina Rizza", "email": "martinafrancesca.rizza@unipv.it" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/compartimental_objectives.png"
        },
        "dataProtected": true,
        "notebookPath": "Mono compartmental Cerebellar Granule cell optimization.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Cerebellum_GrC_mono&branch=main",
        "chooseModel": false
      },
      {
        "id": "cerebellumGrCMulti",
        "title": "Multi compartmental Cerebellar Granule cell optimization",
        "description": "Using BluePyOpt to optimize a multcompartmental cerebellar granule cell composed by four dendrites, soma and a custom multi segmented axon. All the parameters, channels and morphology can be modified. This version runs directly on the collaboratory and it is limited to small optimizations",
        "contributors": [
          { "name": "Stefano Masoli", "email": "stefano.masoli@unipv.it" },
          { "name": "Martina Rizza", "email": "martinafrancesca.rizza@unipv.it" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/compartimental_objectives.png"
        },
        "dataProtected": true,
        "notebookPath": "Multi compartmental Cerebellar Granule cell optimization.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Cerebellum_GrC_multi&branch=main",
        "chooseModel": false
      },
      {
        "id": "cerebellumGrCMultiaxon",
        "title": "Custom Axon Cerebellar Granule cell simulation",
        "description": "The purpose of this usecase it to explain how to setup an axon, built with BluePyOpt, containing an erbitrary number of sections. Afterward to simulate an actual cerebellar granule cell model with an axon composed by over 300 sections.",
        "contributors": [
          { "name": "Stefano Masoli", "email": "stefano.masoli@unipv.it" },
          { "name": "Martina Rizza", "email": "martinafrancesca.rizza@unipv.it" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/Granule_2019.png"
        },
        "dataProtected": true,
        "notebookPath": "Custom Axon Cerebellar Granule cell simulation.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Cerebellum_GrC_axon_multi&branch=main",
        "chooseModel": false
      },
      {
        "id": "cerebellumPurkinje",
        "title": "Simulation and validation of a mouse Purkinje cell multicompartmental model",
        "description": "Simulation and validation of a mouse Purkinje cell multicompartmental model obtained from BluePyOpt optimizer. The purpose of this usecase it to extract, simulate and validated a series of physiologically correct Purkinje cells. This notebook runs directly on the Collab and does not require HPC resources",
        "contributors": [
          { "name": "Stefano Masoli", "email": "stefano.masoli@unipv.it" },
          { "name": "Martina Rizza", "email": "martinafrancesca.rizza@unipv.it" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellmodeling/PC_usecase.png"
        },
        "dataProtected": true,
        "notebookPath": "Purkinje cell simulation and validation.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Cerebellum_Purkinje_muti&branch=main",
        "chooseModel": false
      }
    ]
  },
  {
    "title": "Morphology",
    "id": "morphology",
    "usecases": [
      {
        "id": "morphologyAnalysis",
        "title": "Morphology analysis",
        "description": "Performs analysis on a morphology with NeuroM",
        "contributors": [
          { "name": "Liesbeth Vanherpe", "email": "" }
        ],
        "maturity": ["beta"],
        "experience": ["power"],
        "access": null,
        "disabled": false,
        "implementation": "ipynb",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/morphology/morphology.png"
        },
        "dataProtected": false,
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/MorphologyAnalysis/index.html",
        "chooseModel": true,
        "notebookPath": "Morphology_Analysis.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Morphology&branch=master"
      },
      {
        "id": "morphologyVisualization",
        "title": "Morphology visualization",
        "description": "Display neuron morphology in 3D",
        "contributors": [
          { "name": "Genrich Ivaska", "email": "genrich.ivaska@epfl.ch" }
        ],
        "maturity": null,
        "access": null,
        "experience": ["all"],
        "disabled": false,
        "implementation": "webapp",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/morphology/morphology_3d.png"
        },
        "dataProtected": true,
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/MorphologyVisualization/index.html",
        "chooseModel": true,
        "externalUrl": "https://bluenaas-morph-viewer.apps.ebrains.eu",
        "externalUrlModelPlaceholder": "{EXTERNAL_URL}/?model={MORPHOLOGY_URL}",
        "maxModelSelection": 1
      }
    ]
  },
  {
    "title": "Single Cell InSilico Experiments",
    "id": "singlecellinsilicoexperiments",
    "usecases": [
      {
        "id": "blueNaas",
        "title": "Single cell in silico experiments under current clamp",
        "description": "",
        "contributors": [
          { "name": "Genrich Ivaska", "email": "genrich.ivaska@epfl.ch" }
        ],
        "maturity": ["beta"],
        "experience": ["all"],
        "access": null,
        "disabled": false,
        "dataProtected": false,
        "implementation": "webapp",
        "chooseModel": true,
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/singlecellinsilicoexperiments/l5pc_release_responses-eps.jpg"
        },
        "externalUrl": "https://bluenaas-single-cell.apps.ebrains.eu",
        "tutorial": "https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/web-resources-bsp/bsp-video-tutorials/SingleCellInSilicoExperimentsUnderCurrentClamp/index.html",
        "externalUrlModelPlaceholder": "{EXTERNAL_URL}/#/url/{TRIMMED_SOURCE_PATH}",
        "maxModelSelection": 1
      }
    ]
  },
  {
    "title": "Small Circuit InSilico Experiments",
    "id": "smallcircuitinsilicoexperiments",
    "usecases": [
      {
        "id": "bluePairRecordingMouseO1",
        "title": "Mouse O1 - Scaffold Somatosensory Cortex Microcircuit for Mouse",
        "description": "This model combines specific datasets obtained for mouse somatosensory cortex, models of neuronal electrophysiology constrained to mouse primary visual cortex data from the Allen Cell Types Database, and datasets that were algorithmically transformed from rat to mouse.",
        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "dataProtected": false,
        "implementation": "webapp",
        "disabled": false,
        "contributors": [
          { "name": "Michael W. Reimann", "email": "michael.reimann@epfl.ch" },
          { "name": "Eilif Muller", "email": "eilif.mueller@epfl.ch" },
          { "name": "Srikanth Ramaswamy", "email": "srikanth.ramaswamy@epfl.ch" }
        ],
        "externalUrl": "https://bluenaas-small-area.apps.ebrains.eu/circuits/mouse-sscx",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/smallcircuitinsilicoexperiments/mouse_o1.png"
        },
        "tutorial": null
      },
      {
        "id": "dbbsCerebellumMulticomp",
        "title": "Mouse cerebellum cortex",
        "description": "Reconstruction and simulation of a biophysically detailed microcircuit of the cerebellar cortex, using the Brain Scaffold Builder (BSB), which provides an organized staged workflow, multiple strategies for cell placement and connectivity, a configuration system capable of including detailed neuronal and synaptic models and the support for multiple simulators with transparent parallel processing.",
        "experience": ["all"],
        "implementation": "ipynb",
        "maturity": null,
        "access": null,
        "dataProtected": false,
        "disabled": false,
        "contributors": [
          { "name": "Robin GL De Schepper", "email": "robingilbert.deschepper@unipv.it" },
          { "name": "Alice Geminiani", "email": "alice.geminiani@unipv.it" },
          { "name": "Stefano Masoli", "email": "stefano.masoli@unipv.it" },
          { "name": "Martina Rizza", "email": "martina.rizza@unipv.it" },
          { "name": "Alberto Antonietti", "email": "alberto-antonietti@unipv.it" },
          { "name": "Claudia Casellato", "email": "claudia.casellato@unipv.it" },
          { "name": "Egidio D'Angelo", "email": "egidio.dangelo@unipv.it" }
        ],
        "picture": {
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        "notebookPath": "Cerebellar%20scaffold%20multicompartmental%20simulation.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/Cerebellum_multicompartment_simulation&branch=main",
        "tutorial": null
      },
      {
        "id": "bluePairRecordingHippocampusCA1",
        "title": "Rat hippocampus CA1",
        "description": "A circuit of detailed neuron models based on the Ascoli atlas.",
        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "dataProtected": false,
        "implementation": "webapp",
        "disabled": false,
        "contributors": [
          { "name": "Szabolcs Káli", "email": "kali@koki.hu" },
          { "name": "Audrey Mercer", "email": "a.mercer@ucl.ac.uk" },
          { "name": "Michele Migliore", "email": "michele.migliore@yale.edu" },
          { "name": "Armando Romani", "email": "armando.romani@epfl.ch" },
          { "name": "Eilif Muller", "email": "eilif.mueller@epfl.ch" }
        ],
        "externalUrl": "https://bluenaas-small-area.apps.ebrains.eu/circuits/rat-ca1",
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/smallcircuitinsilicoexperiments/rat-ca1-circuit.png"
        },
        "tutorial": null
      },
      {
        "id": "multiscalebraincircuitmodelsofm1andca3",
        "title": "Multiscale brain circuit models of M1 and CA3",
        "description": "Large-scale and biologically realistic models of rodent motor (M1) thalamocortical circuits and a model of CA3 microcircuits showing cross-frequency coupling. Models were developed using the NetPyNE multiscale modeling tool. ",
        "experience": ["all"],
        "access": null,
        "maturity": ["beta"],
        "disabled": false,
        "implementation": "ipynb",
        "contributors": [
          { "name": "Salvador Dura-Bernal", "email": "salvador.dura-bernal@downstate.edu" },
          { "name": "Joe Graham", "email": "joe.w.graham@gmail.com" },
          { "name": "Eugenio Urdapilleta", "email": "urdapile@gmail.com" },
          { "name": "Joao Moreira", "email": "joao.moreira@downstate.edu" },
          { "name": "William Lytton", "email": "bill.lytton@downstate.edu" },
          { "name": "Samuel Neymotin", "email": "samuel.neymotin@nki.rfmh.org" }
        ],
        "picture": {
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        },
        "dataProtected": true,
        "notebookPath": "NetPyNE_CA3_network.ipynb",
        "notebookRepoUrl": "https://github.com/ebrains-cls-interactive/netpyne_tutorials&branch=master",
        "tutorial": null
      },
      {
        "id": "olfactoryBulb",
        "title": "Olfactory Bulb Explorer",
        "description": "Run a simulation of the olfactory bulb on HPC systems, visualize and download results",
        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "disabled": false,
        "implementation": "webapp",
        "contributors": [
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        ],
        "picture": {
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        },
        "dataProtected": true,
        "externalUrl": "https://olfactory-bulb.ebrains-italy.eu/",
        "tutorial": null
      },
      {
        "id": "striatum_scaffold_create",
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        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "dataProtected": false,
        "implementation": "ipynb",
        "disabled": false,
        "contributors": [
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          { "name": "Alexander Kozlov", "email": "akozlov@kth.se" }
        ],
        "picture": {
          "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/smallcircuitinsilicoexperiments/striatum-scaffold.png"
        },
        "externalUrl": "https://github.com/hjorthmedh/Snudda",
        "tutorial": null,
        "notebookPath": "striatum_example.ipynb",
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      },
      {
        "id": "striatum_scaffold_simulate",
        "title": "Striatum Scaffold model (simulate)",
        "description": "This notebook simulates a scaffold model for the mouse striatum microcircuit. This notebook uses the microcircuit created by the Striatum Scaffold model (create) notebook.",
        "experience": ["all"],
        "maturity": ["beta"],
        "access": null,
        "dataProtected": false,
        "implementation": "ipynb",
        "disabled": false,
        "contributors": [
          { "name": "Johannes Hjorth", "email": "hjorth@kth.se" },
          { "name": "Alexander Kozlov", "email": "akozlov@kth.se" }
        ],
        "picture": {
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        },
        "externalUrl": "https://github.com/hjorthmedh/Snudda",
        "tutorial": null,
        "notebookPath": "striatum_example_simulate.ipynb",
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      }
    ]
  },
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    "title": "Brain Area Circuit InSilico Experiments",
    "id": "brainareacircuitinsilicoexperiments",
    "usecases": [],
    "groups": [
      {
        "title": "Hippocampus",
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            "description": "A circuit of detailed neuron models based on the Ascoli atlas.",
            "experience": ["all"],
            "maturity": ["beta"],
            "access": null,
            "dataProtected": false,
            "implementation": "webapp",
            "disabled": false,
            "contributors": [
              { "name": "Armando Romani", "email": "armando.romani@epfl.ch" },
              { "name": "Stefano Antonel", "email": "stefano.antonel@epfl.ch" },
              { "name": "Michael Gevaert", "email": "michael.gevaert@epfl.ch" }
            ],
            "externalUrl": "https://bluenaas-brain-area.apps.ebrains.eu/index.html#/circuits/hippo_hbp_sa_full_ca1",
            "picture": {
              "src": "https://raw.githubusercontent.com/ebrains-cls-interactive/usecases-info/develop/images/brainareacircuitinsilicoexperiments/hippocampusConnections.png"
            },
            "tutorial": null
          },
          {
            "id": "simLauncherMicrocircuit",
            "title": "Configure and run a hippocampus microcircuit",
            "description": "A microcircuit of detailed neuron models.",
            "experience": ["all"],
            "maturity": ["beta"],
            "access": null,
            "dataProtected": false,
            "implementation": "webapp",
            "disabled": false,
            "contributors": [
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              { "name": "Stefano Antonel", "email": "stefano.antonel@epfl.ch" },
              { "name": "Michael Gevaert", "email": "michael.gevaert@epfl.ch" }
            ],
            "externalUrl": "https://bluenaas-brain-area.apps.ebrains.eu/index.html#/circuits/hippo_mooc_sa_microcircuit",
            "picture": {
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        ]
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  }
]