diff --git a/docs/cli/checkpoint.rst b/docs/cli/checkpoint.rst
new file mode 100644
index 0000000..490839a
--- /dev/null
+++ b/docs/cli/checkpoint.rst
@@ -0,0 +1,8 @@
+copy
+====
+
+.. argparse::
+    :module: anemoi.datasets.__main__
+    :func: create_parser
+    :prog: anemoi-datasets
+    :path: copy
diff --git a/docs/cli/introduction.rst b/docs/cli/introduction.rst
new file mode 100644
index 0000000..21ac028
--- /dev/null
+++ b/docs/cli/introduction.rst
@@ -0,0 +1,25 @@
+Introduction
+============
+
+When you install the `anemoi-inference` package, this will also install command line tool
+called ``anamois-inference`` this can be used to manage the checkpoints.
+
+The tools can provide help with the ``--help`` options:
+
+.. code-block:: bash
+
+    % anamoi-inference --help
+
+The commands are:
+
+.. toctree::
+    :maxdepth: 1
+
+    checkpoint
+    metadata
+
+.. argparse::
+    :module: anemoi.inference.__main__
+    :func: create_parser
+    :prog: anemoi-inference
+    :nosubcommands:
diff --git a/docs/cli/metadata.rst b/docs/cli/metadata.rst
new file mode 100644
index 0000000..b4a6687
--- /dev/null
+++ b/docs/cli/metadata.rst
@@ -0,0 +1,10 @@
+create
+======
+
+Use this command to create a dataset from a recipe file:
+
+.. argparse::
+    :module: anemoi.datasets.__main__
+    :func: create_parser
+    :prog: anemoi-datasets
+    :path: create
diff --git a/docs/conf.py b/docs/conf.py
index 208e3d0..d9d5ce7 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -61,6 +61,7 @@
     "sphinx.ext.intersphinx",
     "sphinx.ext.autodoc",
     "sphinx.ext.napoleon",
+    "sphinxarg.ext",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
diff --git a/docs/index.rst b/docs/index.rst
index 20e7050..e27b713 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -27,6 +27,30 @@ packages.
 
     installing
 
+Modules
+-------
+
+.. toctree::
+    :maxdepth: 1
+    :glob:
+
+    modules/*
+
+**Command line tool**
+
+- :doc:`cli/introduction`
+- :doc:`cli/checkpoint`
+- :doc:`cli/metadata`
+
+.. toctree::
+    :maxdepth: 1
+    :hidden:
+    :caption: Command line tool
+
+    cli/introduction
+    cli/checkpoint
+    cli/metadata
+
 Anemoi packages
 ---------------
 
diff --git a/docs/modules/runner.rst b/docs/modules/runner.rst
new file mode 100644
index 0000000..1fbdb73
--- /dev/null
+++ b/docs/modules/runner.rst
@@ -0,0 +1,7 @@
+runner
+======
+
+.. automodule:: anemoi.inference.runner
+    :members:
+    :no-undoc-members:
+    :show-inheritance:
diff --git a/docs/requirements.txt b/docs/requirements.txt
index c85e9f1..8b8bccd 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -2,6 +2,7 @@
 sphinx
 sphinx_rtd_theme
 nbsphinx
+sphinx_argparse
 
 # Also requires `brew install pandoc` on Mac
 pandoc