diff --git a/NEWS.md b/NEWS.md index cb32e5bc..a3406c32 100644 --- a/NEWS.md +++ b/NEWS.md @@ -3,8 +3,8 @@ ## Major Changes - implemented a new `color_kegg_pathway()` function using `ggkegg` to create colored KEGG pathway ggplot objects (instead of using `KEGGREST` to obtain the colored PNG files, which no longer works #169) -- renamed the `visualize_hsa_KEGG` to `visualize_KEGG_diagram()` to reflect this is now able to handle KEGG pathway enrichment results from any organism -- updated the `visualize_term_interactions()` and `visualize_KEGG_diagram()` functions so that they now return a list of ggplot objects (named by term ID) +- renamed the `visualize_hsa_KEGG` function to `visualize_KEGG_diagram()` to reflect this is now able to handle KEGG pathway enrichment results from any organism +- updated the `visualize_terms()`, `visualize_term_interactions()` and `visualize_KEGG_diagram()` functions so that they now return a list of ggplot objects (named by term ID) - updated the `get_kegg_gsets()` function to also use `ggkegg` for fetching genes per pathway data - removed unneeded dependencies: `magick`, `KEGGgraph` and `KEGGREST`