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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(R_to_growth)
export(add_dates)
export(adjust_for_truncation)
export(adjust_infection_to_report)
export(clean_nowcasts)
export(country_map)
export(dist_fit)
export(dist_skel)
export(epi_measures_pipeline)
export(estimate_R0)
export(estimate_doubling_time)
export(estimate_little_r)
export(estimate_r_in_window)
export(estimate_time_varying_r)
export(gamma_dist_def)
export(generate_pseudo_linelist)
export(get_dist_def)
export(get_local_import_case_counts)
export(get_regions)
export(get_timeseries)
export(global_map)
export(growth_to_R)
export(linelist_from_case_counts)
export(load_nowcast_result)
export(lognorm_dist_def)
export(make_conf)
export(map_prob_change)
export(nowcast_pipeline)
export(plot_confidence)
export(plot_forecast)
export(plot_grid)
export(plot_pipeline)
export(plot_summary)
export(pull_max_var)
export(rbinom_size)
export(regional_rt_pipeline)
export(regional_summary)
export(report_cases)
export(report_littler)
export(report_nowcast)
export(report_reff)
export(report_summary)
export(rt_pipeline)
export(sample_approx_dist)
export(sample_delay)
export(simulate_cases)
export(split_linelist_by_day)
export(summarise_cast)
export(summarise_results)
export(summarise_to_csv)
export(theme_map)
import(Rcpp)
import(methods)
importFrom(EpiEstim,estimate_R)
importFrom(EpiEstim,make_config)
importFrom(EpiSoon,forecast_cases)
importFrom(EpiSoon,forecast_rt)
importFrom(EpiSoon,predict_cases)
importFrom(EpiSoon,predict_current_cases)
importFrom(EpiSoon,score_case_forecast)
importFrom(HDInterval,hdi)
importFrom(R.devices,suppressGraphics)
importFrom(cowplot,get_legend)
importFrom(cowplot,panel_border)
importFrom(cowplot,theme_cowplot)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fifelse)
importFrom(data.table,fwrite)
importFrom(data.table,melt)
importFrom(data.table,merge.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setDTthreads)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(data.table,setorderv)
importFrom(future.apply,future_lapply)
importFrom(ggplot2,.data)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_sf)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_sf)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_date)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,waiver)
importFrom(loo,extract_log_lik)
importFrom(loo,loo)
importFrom(loo,relative_eff)
importFrom(lubridate,days)
importFrom(lubridate,wday)
importFrom(lubridate,ymd)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_plots)
importFrom(purrr,compact)
importFrom(purrr,flatten)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map2_dbl)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfc)
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(purrr,partial)
importFrom(purrr,pmap)
importFrom(purrr,safely)
importFrom(purrr,transpose)
importFrom(rstan,extract)
importFrom(rstan,sampling)
importFrom(stats,glm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,pexp)
importFrom(stats,pgamma)
importFrom(stats,plnorm)
importFrom(stats,quasipoisson)
importFrom(stats,rexp)
importFrom(stats,rgamma)
importFrom(stats,rlnorm)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(stringr,str_to_title)
importFrom(truncnorm,rtruncnorm)
useDynLib(EpiNow, .registration=TRUE)