.pre-commit-config.yaml

# All available hooks: https://pre-commit.com/hooks.html
# R specific hooks: https://github.com/lorenzwalthert/precommit
repos:
-   repo: https://github.com/lorenzwalthert/precommit
    rev: v0.1.3.9014
    hooks: 
    -   id: style-files
        args: [--style_pkg=styler, --style_fun=tidyverse_style]    
    -   id: roxygenize
    # codemeta must be above use-tidy-description when both are used
    # -   id: codemeta-description-updated
    -   id: use-tidy-description
    -   id: lintr
    -   id: readme-rmd-rendered
    -   id: parsable-R
    -   id: no-browser-statement
    -   id: deps-in-desc
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.0.1
    hooks: 
    -   id: check-added-large-files
        args: ['--maxkb=200']
        exclude: 'data/observations/covariants.csv'
        exclude: 'data-raw/observations/covariants.org/process-obs_files'
    -   id: end-of-file-fixer
        exclude: '\.Rd'
-   repo: local
    hooks:
    -   id: forbid-to-commit
        name: Don't commit common R artifacts
        entry: Cannot commit .Rhistory, .RData, .Rds or .rds.
        language: fail
        files: '\.Rhistory|\.RData|\.Rds|\.rds$'
        # `exclude: <regex>` to allow committing specific files.