runtest.yml

name: test
on: [pull_request]  #, push]

jobs:
  # Runs the tests on combinations of the supported python/os matrix.
  test-code:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8', '3.9', '3.10', '3.11']
      fail-fast: false
#      continue-on-error: true

    steps:
      - uses: actions/checkout@v3

      - name: Get conda env file
        shell: bash -l {0}
        run: |
          if [ "$RUNNER_OS" == "macOS"  ]; then
              cp .github/test_conda_env_macOS.yml .github/test_conda_env.yml
          fi

      - name: Setup conda
        uses: conda-incubator/setup-miniconda@v2.1.1
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          python-version: ${{ matrix.python-version }}
          activate-environment: eqcorrscan-test
          use-mamba: true
          
      - name: Update Env
        run: mamba env update -n eqcorrscan-test -f .github/test_conda_env.yml

      - name: install eqcorrscan
        shell: bash -l {0}
        run: |
          pip install -v -e . --no-deps

      - name: print package info
        shell: bash -l {0}
        run: |
          conda info -a
          conda list

#      - name: run all tests
#        shell: bash -l {0}
#        run: |
#          py.test -n 2 -m "not serial and not network and not superslow" --cov-report=xml
#          export OMP_NUM_THREADS=2
#          py.test -m "serial and not network" --cov-report=xml --cov-append
#          py.test -v -m "slow and not serial and not network" --cov-report=xml --cov-append

      - name: run main test suite
        shell: bash -l {0}
        run: |
          py.test -n 2 -m "not serial and not network and not superslow and not slow" --cov-report=xml --dist loadscope

      - name: run serial test
        if: always()
        shell: bash -l {0}
        run: |
          export OMP_NUM_THREADS=2
          py.test -m "serial and not network" --cov-report=xml --cov-append

      - name: run slow tests
        if: always()
        shell: bash -l {0}
        run: |
          py.test -v -m "slow and not serial and not network" --cov-report=xml --cov-append

      - name: upload coverage
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          yml: ./codecov.yml
          fail_ci_if_error: true


  test-code-slow:
    runs-on: "ubuntu-latest"
    strategy:
      matrix:
        python-version: ['3.10']
      fail-fast: false

    steps:
      - uses: actions/checkout@v3

      - name: Setup conda
        uses: conda-incubator/setup-miniconda@v2.1.1
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          python-version: ${{ matrix.python-version }}
          activate-environment: eqcorrscan-test
          use-mamba: true
          
      - name: Update Env
        run: mamba env update -n eqcorrscan-test -f .github/test_conda_env.yml

      - name: install eqcorrscan
        shell: bash -l {0}
        run: |
          pip install -e . --no-deps

      - name: print package info
        shell: bash -l {0}
        run: |
          conda info -a
          conda list

      - name: run network tests
        shell: bash -l {0}
        run: |
          py.test -n 2 -m "network and not superslow" --cov-report=xml
      - name: run tutorials
        if: always()
        shell: bash -l {0}
        run: |
          py.test eqcorrscan/doc/tutorials/*.rst eqcorrscan/doc/submodules/*.rst --cov-report=xml --cov-append
      - name: run superslow tests
        if: always()
        shell: bash -l {0}
        run: |
          py.test -m "superslow" -s eqcorrscan/tests/tutorials_test.py eqcorrscan/tests/subspace_test.py --cov-report=xml --cov-append

      - name: upload coverage
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          yml: ./codecov.yml
          fail_ci_if_error: true

  test-code-fmf:
    runs-on: "ubuntu-latest"
    strategy:
      matrix:
        python-version: ['3.9']
      fail-fast: false

    steps:
      - uses: actions/checkout@v3
      
      - name: Setup conda
        uses: conda-incubator/setup-miniconda@v2.1.1
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          python-version: ${{ matrix.python-version }}
          activate-environment: eqcorrscan-test
          use-mamba: true
          
      - name: Update Env
        run: mamba env update -n eqcorrscan-test -f .github/test_conda_env.yml

      - name: install fmf
        shell: bash -l {0}
        run: |
          cd ..
          git clone https://github.com/beridel/fast_matched_filter.git
          cd fast_matched_filter
          pip install -e . --no-deps
          cd ../EQcorrscan

      - name: install eqcorrscan
        shell: bash -l {0}
        run: |
          pip install -e .

      - name: print package info
        shell: bash -l {0}
        run: |
          conda info -a
          conda list

      - name: run correlation test
        shell: bash -l {0}
        run: |
          export OMP_NUM_THREADS=2
          py.test eqcorrscan/tests/correlate_test.py --cov-report=xml

      - name: upload coverage
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          yml: ./codecov.yml
          fail_ci_if_error: true

# This is a very useful step for debugging, it allows you to ssh into the CI
# machine (https://github.com/marketplace/actions/debugging-with-tmate).
# Make sure to open the log before the job starts else you cant see the tmate
# url. See https://github.com/mxschmitt/action-tmate/issues/1.
# Also, the CI machine will close on a non-zero exit code (annoying). This can
# be overcome by coalescing the null command like so:
# $ some-command-that-can-fail || :
#
#- name: Setup tmate session
#  uses: mxschmitt/action-tmate@v1