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Does not compile on Julia 1.10.1 #69

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DanielBrosch opened this issue Feb 29, 2024 · 3 comments
Closed

Does not compile on Julia 1.10.1 #69

DanielBrosch opened this issue Feb 29, 2024 · 3 comments

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@DanielBrosch
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After running julia> using SDPAFamily on Manjaro I get the following error:

julia> using SDPAFamily
Precompiling SDPAFamily
        Info Given SDPAFamily was explicitly requested, output will be shown live 
ERROR: LoadError: InitError: could not load library "/home/daniel/.julia/artifacts/beeb384c8ba60497d81e26a28f74ed99aef88791/lib/libcxxwrap_julia.so"
/home/daniel/.julia/artifacts/beeb384c8ba60497d81e26a28f74ed99aef88791/lib/libcxxwrap_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.10
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:117
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:116
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/products/library_generators.jl:63 [inlined]
  [4] __init__()
    @ libcxxwrap_julia_jll ~/.julia/packages/libcxxwrap_julia_jll/zmDeI/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.10.0.jl:9
  [5] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1134
  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1122
  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
    @ Base ./loading.jl:1067
  [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
    @ Base ./loading.jl:1581
  [9] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1938
 [10] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [11] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [12] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [14] macro expansion
    @ ./loading.jl:1790 [inlined]
 [15] macro expansion
    @ ./lock.jl:267 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [17] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [18] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [19] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:495
 [21] top-level scope
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/toplevel_generators.jl:192
 [22] include
    @ ./Base.jl:495 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2222
 [24] top-level scope
    @ stdin:3
during initialization of module libcxxwrap_julia_jll
in expression starting at /home/daniel/.julia/packages/SDPA_jll/GhZeT/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-julia_version+1.10.0.jl:4
in expression starting at /home/daniel/.julia/packages/SDPA_jll/GhZeT/src/SDPA_jll.jl:2
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile SDPA_jll [7fc90fd6-dbef-5a6a-93f8-169f2a2e705b] to "/home/daniel/.julia/compiled/v1.10/SDPA_jll/jl_cEkPwa".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2468
  [3] compilecache
    @ ./loading.jl:2340 [inlined]
  [4] (::Base.var"#968#969"{Base.PkgId})()
    @ Base ./loading.jl:1974
  [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93
  [6] #mkpidlock#6
    @ /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined]
  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111
  [8] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [9] invokelatest
    @ ./essentials.jl:889 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:2983
 [11] maybe_cachefile_lock
    @ ./loading.jl:2980 [inlined]
 [12] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1970
 [13] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [14] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [15] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [16] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [17] macro expansion
    @ ./loading.jl:1790 [inlined]
 [18] macro expansion
    @ ./lock.jl:267 [inlined]
 [19] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [20] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [21] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [22] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [23] include
    @ ./Base.jl:495 [inlined]
 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [25] top-level scope
    @ stdin:3
in expression starting at /home/daniel/.julia/packages/SDPAFamily/qnbwo/src/SDPAFamily.jl:1
in expression starting at stdin:3
  ✗ SDPA_jll
  ✗ SDPAFamily
  0 dependencies successfully precompiled in 3 seconds. 49 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

SDPAFamily [bfe18334-aefd-11e9-1109-4bf2b15a5b91]

Failed to precompile SDPAFamily [bfe18334-aefd-11e9-1109-4bf2b15a5b91] to "/home/daniel/.julia/compiled/v1.10/SDPAFamily/jl_GBEvdB".
ERROR: LoadError: InitError: could not load library "/home/daniel/.julia/artifacts/beeb384c8ba60497d81e26a28f74ed99aef88791/lib/libcxxwrap_julia.so"
/home/daniel/.julia/artifacts/beeb384c8ba60497d81e26a28f74ed99aef88791/lib/libcxxwrap_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.10
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:117
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:116
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/products/library_generators.jl:63 [inlined]
  [4] __init__()
    @ libcxxwrap_julia_jll ~/.julia/packages/libcxxwrap_julia_jll/zmDeI/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.10.0.jl:9
  [5] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1134
  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1122
  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
    @ Base ./loading.jl:1067
  [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
    @ Base ./loading.jl:1581
  [9] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1938
 [10] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [11] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [12] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [14] macro expansion
    @ ./loading.jl:1790 [inlined]
 [15] macro expansion
    @ ./lock.jl:267 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [17] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [18] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [19] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:495
 [21] top-level scope
    @ ~/.julia/packages/JLLWrappers/pG9bm/src/toplevel_generators.jl:192
 [22] include
    @ ./Base.jl:495 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2222
 [24] top-level scope
    @ stdin:3
during initialization of module libcxxwrap_julia_jll
in expression starting at /home/daniel/.julia/packages/SDPA_jll/GhZeT/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-julia_version+1.10.0.jl:4
in expression starting at /home/daniel/.julia/packages/SDPA_jll/GhZeT/src/SDPA_jll.jl:2
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile SDPA_jll [7fc90fd6-dbef-5a6a-93f8-169f2a2e705b] to "/home/daniel/.julia/compiled/v1.10/SDPA_jll/jl_cEkPwa".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2468
  [3] compilecache
    @ ./loading.jl:2340 [inlined]
  [4] (::Base.var"#968#969"{Base.PkgId})()
    @ Base ./loading.jl:1974
  [5] mkpidlock(f::Base.var"#968#969"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93
  [6] #mkpidlock#6
    @ /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined]
  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /usr/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111
  [8] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [9] invokelatest
    @ ./essentials.jl:889 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#968#969"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:2983
 [11] maybe_cachefile_lock
    @ ./loading.jl:2980 [inlined]
 [12] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1970
 [13] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [14] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [15] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [16] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [17] macro expansion
    @ ./loading.jl:1790 [inlined]
 [18] macro expansion
    @ ./lock.jl:267 [inlined]
 [19] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [20] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [21] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [22] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [23] include
    @ ./Base.jl:495 [inlined]
 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [25] top-level scope
    @ stdin:3
in expression starting at /home/daniel/.julia/packages/SDPAFamily/qnbwo/src/SDPAFamily.jl:1
in expression starting at stdin:
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /usr/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70
  [2] precompile(ctx::Pkg.Types.Context, pkgs::Vector{…}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, _from_loading::Bool, kwargs::@Kwargs{…})
    @ Pkg.API /usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:1659
  [3] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::@Kwargs{_from_loading::Bool})
    @ Pkg.API /usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
  [4] precompile
    @ /usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
  [5] #precompile#114
    @ /usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
  [6] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [7] invokelatest
    @ ./essentials.jl:889 [inlined]
  [8] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1963
  [9] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [10] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [11] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [13] macro expansion
    @ ./loading.jl:1790 [inlined]
 [14] macro expansion
    @ ./lock.jl:267 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [16] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [17] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [18] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [19] eval
    @ ./boot.jl:385 [inlined]
 [20] eval
    @ ./Base.jl:88 [inlined]
 [21] repleval(m::Module, code::Expr, ::String)
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.73.2/scripts/packages/VSCodeServer/src/repl.jl:229
 [22] (::VSCodeServer.var"#110#112"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.73.2/scripts/packages/VSCodeServer/src/repl.jl:192
 [23] with_logstate(f::Function, logstate::Any)
    @ Base.CoreLogging ./logging.jl:515
 [24] with_logger
    @ ./logging.jl:627 [inlined]
 [25] (::VSCodeServer.var"#109#111"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.73.2/scripts/packages/VSCodeServer/src/repl.jl:193
 [26] #invokelatest#2
    @ ./essentials.jl:892 [inlined]
 [27] invokelatest(::Any)
    @ Base ./essentials.jl:889
 [28] (::VSCodeServer.var"#62#63")()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.73.2/scripts/packages/VSCodeServer/src/eval.jl:34
Some type information was truncated. Use `show(err)` to see complete types.

It seems to be related to this (closed) issue of CxxWrap, maybe it's enough to update it? JuliaInterop/CxxWrap.jl#379.
@blegat
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blegat commented Feb 29, 2024

See the discussion in jump-dev/SDPA.jl#57. Once we have an updated version of SDPA_jll that fixes SDPA.jl, we'll apply it here too

@blegat
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blegat commented Mar 12, 2024

@DanielBrosch CI is passing in #70, can you confirm it's working now with the new version of SDPA_jll ?

@DanielBrosch
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It works now, thank you!

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