build_and_test.yml

name: Lint and test

on: [push, pull_request]

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 5
      matrix:
         python-version: ["3.10"] #, "3.9", "3.10"]

    # Skip `pull_request` runs on local PRs for which `push` runs are already triggered
    if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository

    # Service containers to run with `container-job`
    services:
      # Label used to access the service container
      redis:
        # Docker Hub image
        image: redis
        # Set health checks to wait until redis has started
        options: >-
          --health-cmd "redis-cli ping"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
        ports:
          # Maps port 6379 on service container to the host
          - 6379:6379

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install LDAP dependencies
      run: sudo apt-get -y install libsasl2-dev libldap2-dev libssl-dev

    - name: Set up Conda environment
      uses: mamba-org/setup-micromamba@v1
      with:
        micromamba-version: "latest"
        environment-file: conda-environment.yml
        cache-environment: true
        post-cleanup: "all"

    - name: Install MXCuBE
      run: "${MAMBA_EXE} run --name mxcubeweb poetry install"

    - name: Linting & Code Quality
      run: "${MAMBA_EXE} run --name mxcubeweb poetry run pre-commit run --all-files"

    - name: Test with pytest
      run: "${MAMBA_EXE} run --name mxcubeweb poetry run pytest"