[Bug]: Error loading lab/diagnostic report

[dwradcliffe]

Contact Details

No response

What happened?

Trying to view a specific lab report.
From Medical History -> Clinical Reports -> click a report.

http://localhost:4200/labs/report/57792b77-4e4e-4b9f-85bd-ae3a76143f01/DiagnosticReport/8665ba2c-5cf6-4b7c-826d-389f07ef3f6f

I'm able to find the resource in the explore view, here's the dump:

{
  "resourceType": "DiagnosticReport",
  "id": "8665ba2c-5cf6-4b7c-826d-389f07ef3f6f",
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "LAB",
          "display": "Laboratory"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "58410-2",
        "display": "Complete blood count (hemogram) panel - Blood by Automated count"
      }
    ],
    "text": "Complete blood count (hemogram) panel - Blood by Automated count"
  },
  "subject": {
    "reference": "urn:uuid:470bbce1-f80a-4038-8d47-341290f59282"
  },
  "encounter": {
    "reference": "urn:uuid:1098cfe8-d2da-4d96-9faf-ccdcdb558b80"
  },
  "effectiveDateTime": "2019-09-06T16:51:28-04:00",
  "issued": "2019-09-06T16:51:28.918-04:00",
  "result": [
    {
      "reference": "urn:uuid:f53aef5d-3d2d-4bd9-85dd-0de735867a3c",
      "display": "Leukocytes [#/volume] in Blood by Automated count"
    },
    {
      "reference": "urn:uuid:c230f591-dee9-4d49-81cb-02b2623e99f2",
      "display": "Erythrocytes [#/volume] in Blood by Automated count"
    },
    {
      "reference": "urn:uuid:e95e6413-e9ff-4c80-97f2-932d311d4f97",
      "display": "Hemoglobin [Mass/volume] in Blood"
    },
    {
      "reference": "urn:uuid:3377e296-71e4-4095-b459-92873f255ea4",
      "display": "Hematocrit [Volume Fraction] of Blood by Automated count"
    },
    {
      "reference": "urn:uuid:f66eacd7-af86-4588-a1af-f3f80f701595",
      "display": "MCV [Entitic volume] by Automated count"
    },
    {
      "reference": "urn:uuid:fc1b999a-6404-4ef8-ae18-8a9dbff8258f",
      "display": "MCH [Entitic mass] by Automated count"
    },
    {
      "reference": "urn:uuid:8a96c7f7-4211-4893-9342-0da266d736dc",
      "display": "MCHC [Mass/volume] by Automated count"
    },
    {
      "reference": "urn:uuid:4c5f22cb-3a22-47a4-9b4f-41cbf54a2939",
      "display": "Erythrocyte distribution width [Entitic volume] by Automated count"
    },
    {
      "reference": "urn:uuid:362e3465-ab64-46cc-a337-b46770281416",
      "display": "Platelets [#/volume] in Blood by Automated count"
    },
    {
      "reference": "urn:uuid:e88196b8-431b-4395-b817-4c510176cd59",
      "display": "Platelet distribution width [Entitic volume] in Blood by Automated count"
    },
    {
      "reference": "urn:uuid:01c4cc82-7cd2-4aae-ab10-c59d8f9e15e1",
      "display": "Platelet mean volume [Entitic volume] in Blood by Automated count"
    }
  ]
}

Flavor

Docker

Version

7d0715755051d591bc94e873a75f43d3da4ba921

Relevant log output

DEBU[44792] THE QUERY OBJECT===========> {
  "id": "00000000-0000-0000-0000-000000000000",
  "created_at": "0001-01-01T00:00:00Z",
  "updated_at": "0001-01-01T00:00:00Z",
  "user_id": "5b682497-44ba-4a9a-90a0-3c9ddbea8857",
  "source_id": "57792b77-4e4e-4b9f-85bd-ae3a76143f01",
  "source_resource_type": "urn:uuid:01c4cc82-7cd2-4aae-ab10-c59d8f9e15e1",
  "source_resource_id": ""
}  type=web
ERRO[44792] An error occurred while retrieving resources Invalid resource type for table name: urn:uuid:01c4cc82-7cd2-4aae-ab10-c59d8f9e15e1  type=web

[AnalogJ]

ugh. Looks like there are embedded references that need to be extracted and transformed.
I'm guessing this is from an uploaded FHIR bundle?

We need to make some changes in https://github.com/fastenhealth/fasten-sources/tree/main/clients/internal/manual to handle this

[dwradcliffe]

Yes, from one of the Synthea files.