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Renaming initial flux-system git repository and kustomization removes controllers #3230

Answered by stefanprodan
wvh asked this question in General
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Renaming the root Flux Kustomization that flux bootstrap generates is not supported.

If you really want a different name, you can run flux uninstall --keep-namespace and switch to Flux Operator which allows setting a custom name of the root objects, docs here: https://fluxcd.control-plane.io/operator/fluxinstance/#sync-configuration

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