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environment.yml
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environment.yml
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name: oi2
channels:
- conda-forge
- bioconda
- r
- defaults
dependencies:
- brotli=1.1.0=h0dc2134_1
- brotli-bin=1.1.0=h0dc2134_1
- bzip2=1.0.8=h10d778d_5
- ca-certificates=2023.11.17=h8857fd0_0
- certifi=2023.11.17=pyhd8ed1ab_0
- contourpy=1.2.0=py310ha697434_0
- cycler=0.12.1=pyhd8ed1ab_0
- fonttools=4.47.2=py310hb372a2b_0
- freetype=2.12.1=h60636b9_2
- kiwisolver=1.4.5=py310h88cfcbd_1
- lcms2=2.16=ha2f27b4_0
- lerc=4.0.0=hb486fe8_0
- libblas=3.9.0=21_osx64_openblas
- libbrotlicommon=1.1.0=h0dc2134_1
- libbrotlidec=1.1.0=h0dc2134_1
- libbrotlienc=1.1.0=h0dc2134_1
- libcblas=3.9.0=21_osx64_openblas
- libcxx=16.0.6=hd57cbcb_0
- libdeflate=1.19=ha4e1b8e_0
- libffi=3.4.2=h0d85af4_5
- libgfortran=5.0.0=13_2_0_h97931a8_2
- libgfortran5=13.2.0=h2873a65_2
- libjpeg-turbo=3.0.0=h0dc2134_1
- liblapack=3.9.0=21_osx64_openblas
- libopenblas=0.3.26=openmp_hfef2a42_0
- libpng=1.6.39=ha978bb4_0
- libsqlite=3.44.2=h92b6c6a_0
- libtiff=4.6.0=h684deea_2
- libwebp-base=1.3.2=h0dc2134_0
- libxcb=1.15=hb7f2c08_0
- libzlib=1.2.13=h8a1eda9_5
- llvm-openmp=17.0.6=hb6ac08f_0
- matplotlib=3.8.2=py310h2ec42d9_0
- matplotlib-base=3.8.2=py310hec49e92_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.4=h93d8f39_2
- networkx=3.2.1=pyhd8ed1ab_0
- openjpeg=2.5.0=ha4da562_3
- openssl=3.2.1=hd75f5a5_0
- packaging=23.2=pyhd8ed1ab_0
- pillow=10.2.0=py310he65384d_0
- pip=23.3.2=pyhd8ed1ab_0
- pthread-stubs=0.4=hc929b4f_1001
- pyparsing=3.1.1=pyhd8ed1ab_0
- python=3.10.8=he7542f4_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- readline=8.2=h9e318b2_1
- setuptools=69.0.3=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tk=8.6.13=h1abcd95_1
- unicodedata2=15.1.0=py310h6729b98_0
- wheel=0.42.0=pyhd8ed1ab_0
- xorg-libxau=1.0.11=h0dc2134_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xz=5.2.6=h775f41a_0
- zstd=1.5.5=h829000d_0
- pip:
- anyio==4.2.0
- appnope==0.1.3
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- arrow==1.3.0
- asttokens==2.4.1
- async-lru==2.0.4
- attrs==23.2.0
- axial==0.2.3
- babel==2.14.0
- beautifulsoup4==4.12.3
- bleach==6.1.0
- cffi==1.16.0
- charset-normalizer==3.3.2
- comm==0.2.1
- debugpy==1.8.0
- decorator==5.1.1
- defusedxml==0.7.1
- exceptiongroup==1.2.0
- executing==2.0.1
- fastjsonschema==2.19.1
- fqdn==1.5.1
- goenrich==1.7.0
- idna==3.6
- ipykernel==6.29.0
- ipython==8.20.0
- isoduration==20.11.0
- jedi==0.19.1
- jinja2==3.1.3
- joblib==1.3.2
- json5==0.9.14
- jsonpointer==2.4
- jsonschema==4.21.1
- jsonschema-specifications==2023.12.1
- jupyter-client==8.6.0
- jupyter-core==5.7.1
- jupyter-events==0.9.0
- jupyter-lsp==2.2.2
- jupyter-server==2.12.5
- jupyter-server-terminals==0.5.2
- jupyterlab==4.0.12
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.25.2
- markupsafe==2.1.4
- matplotlib-inline==0.1.6
- mistune==3.0.2
- nbclient==0.9.0
- nbconvert==7.14.2
- nbformat==5.9.2
- nest-asyncio==1.6.0
- notebook-shim==0.2.3
- numpy==1.26.0
- omicsintegrator==2.4.1
- overrides==7.7.0
- pandas==2.2.0
- pandocfilters==1.5.1
- parso==0.8.3
- patsy==0.5.6
- pcst-fast==1.0.10
- pexpect==4.9.0
- platformdirs==4.1.0
- prometheus-client==0.19.0
- prompt-toolkit==3.0.43
- psutil==5.9.8
- ptyprocess==0.7.0
- pure-eval==0.2.2
- pybind11==2.11.1
- pycparser==2.21
- pygments==2.17.2
- python-json-logger==2.0.7
- python-louvain==0.16
- pytz==2023.4
- pyyaml==6.0.1
- pyzmq==25.1.2
- referencing==0.33.0
- requests==2.31.0
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- rpds-py==0.17.1
- scikit-learn==1.4.0
- scipy==1.12.0
- send2trash==1.8.2
- sniffio==1.3.0
- soupsieve==2.5
- stack-data==0.6.3
- statsmodels==0.14.1
- terminado==0.18.0
- threadpoolctl==3.2.0
- tinycss2==1.2.1
- tomli==2.0.1
- tornado==6.4
- traitlets==5.14.1
- types-python-dateutil==2.8.19.20240106
- typing-extensions==4.9.0
- tzdata==2023.4
- uri-template==1.3.0
- urllib3==2.2.0
- wcwidth==0.2.13
- webcolors==1.13
- webencodings==0.5.1
- websocket-client==1.7.0
prefix: /Users/alex/miniconda3/envs/oi2