unix.yml

name: unix

on: [push, pull_request]

jobs:
  clangtidy10_nopy_ompi_h5_ad1_ad2:
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: Spack Cache
      uses: actions/cache@v2
      with: {path: /opt/spack, key: clangtidy10_nopy_ompi_h5_ad1_ad2 }
    - name: Install
      run: |
        sudo apt-get install clang clang-tidy gfortran libopenmpi-dev python
        sudo .github/workflows/dependencies/install_spack
    - name: Build
      env: {CC: clang, CXX: clang++, CXXFLAGS: -Wno-deprecated-declarations}
      run: |
        eval $(spack env activate --sh .github/ci/spack-envs/clangtidy_nopy_ompi_h5_ad1_ad2/)
        spack install

        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DCMAKE_CXX_CLANG_TIDY="$(which clang-tidy);-system-headers=0" -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2 2> clang-tidy.log
        cat clang-tidy.log
        if [[ $(wc -m <clang-tidy.log) -gt 1 ]]; then exit 1; fi

  clang5_nopy_nompi_h5:
    runs-on: ubuntu-18.04
    steps:
    - uses: actions/checkout@v2
    - name: Spack Cache
      uses: actions/cache@v2
      with: {path: /opt/spack, key: clang5_nopy_nompi_h5 }
    - name: Install
      run: |
        sudo apt-get install clang-5.0
        sudo .github/workflows/dependencies/install_spack
    - name: Build
      env: {CC: clang-5.0, CXX: clang++-5.0, CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        eval $(spack env activate --sh .github/ci/spack-envs/clang5_nopy_nompi_h5/)
        spack install

        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=OFF -DopenPMD_USE_MPI=OFF -DopenPMD_USE_HDF5=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

  clang5_nopy_ompi_h5_ad1_ad2_bp3:
    runs-on: ubuntu-18.04
    steps:
    - uses: actions/checkout@v2
    - name: Spack Cache
      uses: actions/cache@v2
      with: {path: /opt/spack, key: clang5_nopy_ompi_h5_ad1_ad2_bp3 }
    - name: Install
      run: |
        sudo apt-get install clang-5.0 gfortran libopenmpi-dev python3
        sudo .github/workflows/dependencies/install_spack
    - name: Build
      env: {CC: clang-5.0, CXX: clang++-5.0, CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        eval $(spack env activate --sh .github/ci/spack-envs/clang5_nopy_ompi_h5_ad1_ad2_bp3/)
        spack install

        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=OFF -DopenPMD_USE_MPI=ON -DopenPMD_USE_HDF5=ON -DopenPMD_USE_ADIOS1=ON -DopenPMD_USE_ADIOS2=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

        find . -name *.bp     | xargs -n1 -P1 -I {} rm -rf {}
        find . -name *.bp.dir | xargs -n1 -P1 -I {} rm -rf {}
        export OPENPMD_BP_BACKEND=ADIOS1
        ctest --output-on-failure

  clang5_nopy_ompi_h5_ad2_newLayout:
    runs-on: ubuntu-18.04
    steps:
    - uses: actions/checkout@v2
    - name: Spack Cache
      uses: actions/cache@v2
      with: {path: /opt/spack, key: clang5_nopy_ompi_h5_ad1_ad2_bp3 }
    - name: Install
      run: |
        sudo apt-get install clang-5.0 gfortran libopenmpi-dev python3
        sudo .github/workflows/dependencies/install_spack
    - name: Build
      env: {CC: clang-5.0, CXX: clang++-5.0, CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        eval $(spack env activate --sh .github/ci/spack-envs/clang5_nopy_ompi_h5_ad1_ad2_bp3/)
        spack install

        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=OFF -DopenPMD_USE_MPI=ON -DopenPMD_USE_HDF5=ON -DopenPMD_USE_ADIOS1=OFF -DopenPMD_USE_ADIOS2=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        export OPENPMD_NEW_ATTRIBUTE_LAYOUT=1
        ctest --output-on-failure

# TODO
#  clang6_py36_nompi_h5_ad1_ad2_libcpp

  clang10_py38_nompi_h5_ad1_ad2_libcpp:
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: Install
      run: |
        sudo apt-get install clang-10 libc++-dev libc++abi-dev libhdf5-dev python3
        python3 -m pip install -U pip
        python3 -m pip install -U numpy
#       TODO ADIOS1 ADIOS2
    - name: Build
      env: {CC: clang-10, CXX: clang++-10, CXXFLAGS: -Werror -Wno-deprecated-declarations}
      # TODO
      # , CXXFLAGS: -nostdinc++ -I/usr/include/c++/10 -I/usr/include/x86_64-linux-gnu/c++/10/, LDFLAGS: -stdlib=libc++ -lc++ -lc++abi}
      run: |
        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=ON -DopenPMD_USE_MPI=OFF -DopenPMD_USE_HDF5=ON -DopenPMD_USE_INVASIVE_TESTS=ON -DCMAKE_VERBOSE_MAKEFILE=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

# TODO
#  clang7_py37_ompi_h5_ad2_asan_ubsan_static
#  clang8_py38_mpich_h5_ad1_ad2_h5coll
#  clang10_py38_ompi_h5_1-10-6_ad1_ad2_release

#  appleclang9_py37_nompi_h5_ad1
#  appleclang10_py37_h5_ad2_libcpp
#  appleclang11_nopy_nompi_h5_ad2

  appleclang12_py_mpi_h5_ad2:
    runs-on: macos-latest
    steps:
    - uses: actions/checkout@v2
    - name: Install
      run: |
        rm -rf /usr/local/bin/2to3
        brew update
        brew install adios2 || true
        brew install hdf5-mpi || true
        brew install python || true
    - name: Build
      env: {CXXFLAGS: -Werror -Wno-deprecated-declarations, MACOSX_DEPLOYMENT_TARGET: 10.9}
      # C++11 & 14 support in macOS 10.9+
      # C++17 support in macOS 10.13+/10.14+
      #   https://cibuildwheel.readthedocs.io/en/stable/cpp_standards/#macos-and-deployment-target-versions
      run: |
        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=ON -DopenPMD_USE_MPI=ON -DopenPMD_USE_HDF5=ON -DopenPMD_USE_ADIOS2=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

# TODO
#  gcc-4.9.4_nopy_nompi_h5_ad1_ad2
#  gcc-4.9.4_nopy_ompi_h5_ad1_ad2
#  gcc-9.3.0_nopy_nompi_h5_ad1_ad2-2.6.0
#  gcc-7.4.0_nopy_ompi_h5_ad1_h5coll
#  gcc-6.5.0_py35_nompi_h5_ad1-1.13.1
#  gcc-8.1.0_py37_nompi_h5_ad1_static
#  gcc-6.5.0_py36_nompi_h5-1.8.13
#  gcc-4.8.5_py35_nompi_h5
#  gcc-7.4.0_py_ompi_h5_ad1_ad2_coveralls

  gcc5_py36_pd_ompi_h5_ad1_ad2:
    runs-on: ubuntu-18.04
    steps:
    - uses: actions/checkout@v2
    - name: Spack Cache
      uses: actions/cache@v2
      with: {path: /opt/spack, key: gcc5_py36_ompi_h5_ad1_ad2 }
    - name: Install
      run: |
        sudo apt-get install g++-5 gfortran libopenmpi-dev python3 python3-setuptools
        sudo .github/workflows/dependencies/install_spack
        python3 -m pip install -U pip
        python3 -m pip install -U numpy
        python3 -m pip install -U mpi4py
        python3 -m pip install -U pandas
    - name: Build
      env: {CC: gcc-5, CXX: g++-5, CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        eval $(spack env activate --sh .github/ci/spack-envs/gcc5_py36_ompi_h5_ad1_ad2/)
        spack install

        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . -DopenPMD_USE_PYTHON=ON -DopenPMD_USE_MPI=ON -DopenPMD_USE_HDF5=ON -DopenPMD_USE_ADIOS1=ON -DopenPMD_USE_ADIOS2=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

  gcc9_py38_pd_nompi_h5_ad1_ad2_libcpp:
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: Install
      run: |
        sudo apt-get install g++ libopenmpi-dev libhdf5-openmpi-dev libadios-dev python3 python3-numpy python3-mpi4py python3-pandas
#       TODO ADIOS1 (.pc file broken?) ADIOS2
    - name: Build
      env: {CXXFLAGS: -Werror -Wno-deprecated-declarations, PKG_CONFIG_PATH: /usr/lib/x86_64-linux-gnu/pkgconfig}
      run: |
        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        find /usr -name adios.pc
        cmake -S .. -B . -DopenPMD_USE_PYTHON=ON -DopenPMD_USE_MPI=ON -DopenPMD_USE_HDF5=ON -DopenPMD_USE_INVASIVE_TESTS=ON
        cmake --build . --parallel 2
        ctest --output-on-failure

  icc_cxxonly:
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: Install
      run: |
        sudo .github/workflows/dependencies/install_icc
    - name: Build
      env: {CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        set +e; source /opt/intel/oneapi/setvars.sh; set -e
        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . \
          -DCMAKE_C_COMPILER=$(which icc)    \
          -DCMAKE_CXX_COMPILER=$(which icpc) \
          -DopenPMD_USE_PYTHON=OFF           \
          -DopenPMD_USE_MPI=OFF
        cmake --build . --parallel 2
        ctest --output-on-failure

  icx_cxxonly:
    runs-on: ubuntu-20.04
    steps:
    - uses: actions/checkout@v2
    - name: Install
      run: |
        sudo .github/workflows/dependencies/install_icx
    - name: Build
      env: {CXXFLAGS: -Werror -Wno-deprecated-declarations}
      run: |
        set +e; source /opt/intel/oneapi/setvars.sh; set -e
        mkdir build && cd build
        ../share/openPMD/download_samples.sh && chmod u-w samples/git-sample/*.h5
        cmake -S .. -B . \
          -DCMAKE_C_COMPILER=$(which icx)    \
          -DCMAKE_CXX_COMPILER=$(which icpx) \
          -DopenPMD_USE_PYTHON=OFF           \
          -DopenPMD_USE_MPI=OFF              \
          -DCMAKE_C_COMPILER_ID="Clang"                  \
          -DCMAKE_C_COMPILER_VERSION=12.0                \
          -DCMAKE_C_STANDARD_COMPUTED_DEFAULT="11"       \
          -DCMAKE_CXX_COMPILER_ID="Clang"                \
          -DCMAKE_CXX_COMPILER_VERSION=12.0              \
          -DCMAKE_CXX_STANDARD_COMPUTED_DEFAULT="14"
        cmake --build . --parallel 2
        ctest --output-on-failure