- Fix CRAN nit re vcdExtra-package.Rd
- Fix moved URL - http: -> https:
- Fix xrefs in vignettes
- More spellcheck
- Fixed one more NOTE re: AirCrash.Rd for a URL
- Imports: tidyr must depend on (>= 1.3.0) for one use in a vignette.
- Enhanced the vignette, "Creating and manipulating frequency tables",
vignettes/creating.Rmd - Created a new vignette, "Mobility tables", with extensive examples of models and graphs for square mobility tables.
- All datasets now classified with \concept{} tags by method of analysis. These can be found using
help.search(pattern, field="concept") - Added a vignette,
datasets.Rmdshowing all datasets classified by method tags. Links only work in thepkgdownsite. - Added
Asbestosdata
This is a major enhancement release of the vcdExtra package, focusing on documentation and examples.
- added
HouseTasksdata set, illustrating permutation of row / col variables - package now depends on R (>= 3.5.0) per CRAN nit
- add
Suggests: seriationto illustrate CA re-ordering of rows/cols based on correspondence analysis - all .Rd files reformatted and many examples extended.
- the vignette
mosaic.Rmdon mosaic displays has been extensively revised with examples for square tables and permutation of row / column variables. - begin to classify datasets with
\concept{}tags - Added a new
demo-housing.Rmdvignette, using content fromdemo/housing.R.
- rename vignettes to be in order
- Fixed warning from
expand.dft()re type.convert - Old
.Rnwvignettes converted to.Rmd - Fixed two problems detected in the initial submission.
- Fix some issues with
CMHtest()typesargument #PR11 [Thx: ShuguangSun, Matt Kumar] - Fix some Winbuilder URL nits; extensive spell checking
- Fix problem re use of rgl in
mosaic3d()examples
- Fix
datasets()to work with packages not using LazyData #PR7 [Thx: Duncan Murdoch] - Bump package Version
- fix Version number for gnm in
DESCRIPTION - fix
expand.dftandexpand.tableto work with tibbles [Thx: Duncan Murdoch] - vcdExtra gets a hex sticker
- Fixed buglet in
expand.dft()when table is 1-dim [Thx: Long Qu] - Added
zero.test(), a simple score test for zero inflation - Development has moved to https://github.com/friendly/vcdExtra
- Added Glass data
- introduce links and references to DDAR
- added
mcaplot()to plot MCA solutions in DDAR style - added
update.xtabs()method - updated vignette to refer to DDAR
- Added Burt data
- Fixed examples/vignette for ggplot_2.0.0
- bump pkg Version for CRAN
- Added HospVisits data
- Added Mice data
- Removed uses of
summarise()and Summarise() from demos and examples, in preparation for deprecating them. summarise()is now deprecated- Now use
importsFrom()for all functions from recommended packages
- Fixed Title: and Description: for CRAN
- Removed loddsratio (now in vcd) (rev 252)
- Removed print.Kappa (now in vcd) (rev 253)
- Fixed bug in
CMHtest(): rmeans and cmeans labels were reversed (rev 254) - Fixed error in Fungicide.Rd, now that we require vcd_1.3-3 (rev 254)
- Added WorkerSat data - 2 x 2 x 2
- Added AirCrash data
- Minor doc changes
- Added Cormorants data (fixed to latest)
- Added
LRstats(), to replace Summarise. Older summarise() and Summarise() will eventually be deprecated. - Now Suggests: AER for NMES1988 data
collapse.table()now works with array objects
- Fixed bug in logLik.loglm when the data contain zero frequencies (rev 228)
- Made Summarise generic, adding a method for "glmlist" objects (rev 230)
- Added a coef() method for "glmlist" objects (thx: John Fox)
- Added a Summarise.loglmlist method (rev 232)
- Replaced all documentation uses of summarise() with Summarise() (rev 233)
- Added
cutfac(), a convenience wrapper for cut() (rev 234) - Now use
rgl::in all mosaic3d functions
- added Summarise, to replace summarise
- Added HairEyePlace data - 4 x 5 x 2, Caithness and Aberdeen hair/eye color (rev 223)
- Added PhdPubs data from Long (1997) - publications by PhD candidates
- Allow Summarise to work with models w/o a deviance() function
- Fixed bug in Summarise wrt degrees of freedom
- Added ICU data
- Added Toxaemia data - multivariate response contingency table (rev 209)
- Added Vietnam data - 2 x 5 x 4 frequency table (rev 210)
- Added logLik.loglm to allow use of AIC() and BIC() for loglm models (rev 212)
- Fixed loddsratio.Rd to work with revised vcd::CoalMiners data (rev 212)
- Added blogits for bivariate binary response data
- Added Vote1980 data (rev 214)
- Removed Authors: in DESCRIPTION, bumped Version
- Added ShakeWords data set- word frequency counts from Shakespeare (rev 188)
- Added Geissler data-- all family sizes for Saxony sex composition data (rev 190)
- Added logseries functions for the logarithmic series distribution (rev 191)
- Added Depends data -- dependencies of r packages (rev 192)
- Fixed buglet in seq_loglm() not respecting arrays
- Added seq_mosaic() (rev 194)
- Added CyclingDeaths data (rev 196)
- mosaic3d() gets an interpolate= option to control shading levels (rev 197)
- Fixed bug in seq_mosaic, thx to David Meyer (rev 200)
- Fixed bug in seq_loglm() when marginals != 1:nf
- Added mosaic.glmlist to plot mosaics (or other strucplots) for some or all models in a glmlist (rev 169)
- Added loglin-utilities.R, containing a suite of functions to provide a more conceptual way to specify loglinear models by type ('joint', 'conditional', 'mutual', 'markov', 'saturated') (rev 171)
- Added mosaic.loglmlist, similar to mosaic.glmlist for models fit using MASS::loglm (rev 173)
- Both mosaic.glmlist and mosaic.glmlist get an explicit panel=argument; both get some more sensible default default arguments (rev 175)
- Added seq_loglm to fit sequential loglm models to marginal subtables, giving a loglmlist result (rev 176)
- Added Accident data (rev 178); fleshed out Accident examples (rev 180)
- Fixed use of ::: for R 3.0.1 (rev 179)
- Fixed various problems related to use of MASS:loglm (rev 181-183)
- Added Titanicp to datasets (rev 185)
- Revised vcd-tutorial showing some examples of plyr; added a section on RC models
- Added Donner data with example of ggplot2 plot for a binomial glm()
- Added vcd-tutorial section using ggplot2 for Donner data
- Enhanced datasets() to provide a maxTitle argument (rev 153)
- Added doubledecker plots to Dyke.Rd (rev 156)
- Added Draft1970table and Draft1970 data sets (rev 158)
- Added example of doubledecker plots to vcd-tutorial vignette (rev 164)
- Completed CMHtest methods, adding overall tests across strata in a general way
- CMHtest now gets an S3 generic with a formula interface
- print Kappa gets digits= and CI= arguments
- Added Hosmer Lemeshow and HLtest methods, including plotting via vcd::rootogram()
- Added CMHtest for general Cochran-Mantel-Haenszel tests
- Revised vcd-tutorial vignette, adding a section on CMH tests; removed dependence on Z.cls
- Added Mammograms data (4x4, ordered factors, agreement)
- Extended mosaic.glm examples
- Added Alligator data (4x2x2x5, in frequency form)
- Added DaytonSurvey data (5-way, 2x2x2x2x2 in frequency form)
- Extended vcd-tutorial vignette with a section on collapsing over factors
- Removed aperm.* now that aperm.table is in base R
- Added loddsratio and related methods for log odds ratios, generalizing vcd::oddsratio from 2 x 2 (x strata) tables to R x C (x strata) tables
- Added as.matrix.loddsratio, as.array.loddsratio methods
- Added some simple plot examples to example(loddsratio), anticipating a plot method
- Added data(Fungicide), a 2 x 2 x 2 x 2 table
- Renamed summarize() and related methods to summarise() to avoid conflict with plyr.
- Addition to vcd-tutorial vignette on use of aperm() with table objects
- Updated demo(yamaguchi-xie) to correct row/col nomenclature and add plot of BIC
- Added aperm() S3 generic to handle table objects
- Moved tv.dat to inst/doc/extdata to avoid warnings in R 2.12+
- Added Yamaguchi87 data (5x5x3 three-way mobility table in frequency form)
- Added demo(yamaguchi-xie) illustrating fitting and visualization of the models of homogeneous and log multiplicative layer effects fit in Xie (1992, Table 1)
- Added BIC to summarize() and friends
- Added Hauser79 data (two-way mobility table), plus some examples from Powers and Xie (2008)
- Added Crossings() to construct interactions for Goodman 1972 crossings model.
- Added datasets() to list datasets in packages
- Extended description and examples of Kway()
- Added meanResiduals() and extended mosaic.glm() (Heather Turner)
- summarize() gets a sortby argument for glmlist and loglmlist objects
- Fleshed out mosaic3d, allowing display of observed or expected, internally calculated or externally supplied residuals, specifying the initial 3D shape, etc. This completes the 'top-level' work on mosaic3d(), borrowing code from vcd::strucplot.
- Added initial handling for zero cells in the table to mosaic3d().
- Added center3d() for finding the mean coordinates of shape3d objects.
- Added demo(mosaic-hec) comparing 2D and 3D mosaics for HairEyeColor data
- Gave mosaic3d a label_edge argument, allowing labels for dimensions at minima or maxima
- Made mosaic3d object oriented, giving it a loglm method
- Added Kway(), fitting all 0-way, 1-way, 2-way, ... k-way models in a glm
- Added demo(mosaic3d-demo), a proof-of-concept for doing 3D mosaic displays
- Added mosaic3d(), an initial basic Version.
- Factored out split3d() and gave it S3 methods
- Revised vignette("vcd-tutorial"): added some hints for mosaic(), corrected stuff regarding prior limitations of mosaic.glm()
- Added demo(Wong3-1): three-way table, with models of conditional association
- Added Suggest: effects for effects plots of glm(), multinom() and polr() models
- Added demo(housing): visualize models fit in example(housing, package="MASS") using mosaic() and effect plots.
- Updated demo(Wong2-3): added model comparison plots, glmlist processing
- Added Suggest: VGAM
- Extended package description in vcdExtra-package.Rd
- Added glmlist() to facilitate processing, extraction, plotting, etc. of a collection of glm() models
- Added loglmlist(), for collections of loglm() objects
- Added summarize methods for glm, glmlist, loglm and loglmlist objects
- Added example(Caesar), illustrating structural zeros
- Re-named Heckman variables to e1971, ..., e1968 (errors from loglm); began example(Heckman)
- Added example(Detergent), example(Dyke)
- Fixed bug with mosaic.glm when data in global environment (Heather Turner)
- Added sieve.glm and assoc.glm methods (MF)
- Added modFit.glm and modFit.loglm
- Added demo(Wong2-3)
- Added new datasets: data/{Abortion, Bartlett, Caesar, Cancer, Detergent, Dyke, Gilby, Heart, Heckman, Hoyt, Mobility} from mosdata.sas via md2r.sas converter.
- Fixed small documentation warnings
- Switched inst/CHANGES to NEWS
- Added Depends: gnm
- Added demo/{mental-glm, ucb-glm, vision-quasi}
- Added demo/{occStatus,yaish-unidiff}
- Initial release to CRAN
- mosaic.glm now uses object$data if available
- Fixed bugs in mosaic.glm, mosaic.gnm in models with terms like Diag(dest, origin) that get included in x$xlevels
- Fixed bugs in mosaic.gnm
- Fixed print.GKgamma
- Added example of GKgamma to vcd-tutorial
- Added more examples to mosaic.glm.Rd
- Fixed bugs in mosaic.glm and mosaic.gnm
- Added vcd-tutorial vignette
- Initial Version on R-Forge.