From 3f03864fbe38b2b0bef86a4b345f789000f44812 Mon Sep 17 00:00:00 2001 From: Thomas Weber Date: Thu, 13 Jun 2024 08:06:45 +0000 Subject: [PATCH] Testing execution on slurm --- .tests/config/slurm_config.yaml | 8 ++++++++ config/config.yaml | 2 +- 2 files changed, 9 insertions(+), 1 deletion(-) create mode 100644 .tests/config/slurm_config.yaml diff --git a/.tests/config/slurm_config.yaml b/.tests/config/slurm_config.yaml new file mode 100644 index 0000000..b2fe422 --- /dev/null +++ b/.tests/config/slurm_config.yaml @@ -0,0 +1,8 @@ +default-resources: + mem_mb: 1000 + runtime: 30 + +set-resources: + ashleys_bwa_index: + runtime: 60 + mem_mb: 2000 diff --git a/config/config.yaml b/config/config.yaml index c4850c0..a140245 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -73,7 +73,7 @@ ashleys_threshold: 0.5 # Enable or disable FastQC analysis MultiQC: False -# Enable or disable ashleys-qc +# Enable or disable ashleys-qc automatic classification bypass_ashleys: False # --------------------------------------------------------