From 800b89a4183074dccbd6a20fa9ce26b0ebd54809 Mon Sep 17 00:00:00 2001 From: Thomas Weber Date: Tue, 16 Jan 2024 19:48:24 +0000 Subject: [PATCH] Update github action for testing --- .github/workflows/main_test.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/main_test.yaml b/.github/workflows/main_test.yaml index ba0cee7..e8fab51 100644 --- a/.github/workflows/main_test.yaml +++ b/.github/workflows/main_test.yaml @@ -65,7 +65,7 @@ jobs: conda install -c conda-forge mamba - name: Setup snakemake run: | - mamba install -c conda-forge -c bioconda snakemake singularity snakemake-storage-plugin-http + mamba install -c conda-forge -c bioconda "snakemake==7.32.4" - name: Run workflow run: | snakemake --cores 1 --use-conda --configfile .tests/config/simple_config.yaml --conda-frontend mamba -p --verbose --debug --snakefile workflow/Snakefile