From ca62ad1ad1360b53bf2771c628a80d41ccd0bd02 Mon Sep 17 00:00:00 2001 From: Thomas Weber Date: Wed, 26 Jun 2024 11:17:47 +0200 Subject: [PATCH] Add .tests-mock, update GH actions, synchronise generate_exclude_file_for_mosaic_count --- github-actions-runner/.tests-mock/.gitattributes | 0 github-actions-runner/.tests-mock/.gitignore | 0 github-actions-runner/.tests-mock/README.md | 0 workflow/rules/count.smk | 1 + 4 files changed, 1 insertion(+) create mode 100644 github-actions-runner/.tests-mock/.gitattributes create mode 100644 github-actions-runner/.tests-mock/.gitignore create mode 100644 github-actions-runner/.tests-mock/README.md diff --git a/github-actions-runner/.tests-mock/.gitattributes b/github-actions-runner/.tests-mock/.gitattributes new file mode 100644 index 00000000..e69de29b diff --git a/github-actions-runner/.tests-mock/.gitignore b/github-actions-runner/.tests-mock/.gitignore new file mode 100644 index 00000000..e69de29b diff --git a/github-actions-runner/.tests-mock/README.md b/github-actions-runner/.tests-mock/README.md new file mode 100644 index 00000000..e69de29b diff --git a/workflow/rules/count.smk b/workflow/rules/count.smk index c7c5238b..66180303 100755 --- a/workflow/rules/count.smk +++ b/workflow/rules/count.smk @@ -1,5 +1,6 @@ if config["ashleys_pipeline"] is False: + rule generate_exclude_file_for_mosaic_count: input: bam=lambda wc: expand(