Conda_help.txt

# conda add
conda config -add channels defaults
conda config -add channels bioconda
conda config -add channels conda-forge

# conda install
conda install bwa
conda create -n aligners bwa bowtie hisat sta

conda -version # version
conda update conda # update
conda create -n python3 # create new envrionment
source activate python3
conda info -envs # list all environments, current setting is started with "*"

source activate base # switch to base envrionment
source deactivate # return envrionment
conda create -n python3 python=3  # install python3 under new envrionment
python --version  # check python version
conda list  # check package 

conda search somepackage # whether one package can be installed
conda install -name base somepackage # install package under one envrionment
conda remove -n base somepackage # remove one package under specific envrionment
conda remove -n python3 -all  # remove one envrionment