From 84b7d71cb85c66ca8311f876e929dd99c9ebe70a Mon Sep 17 00:00:00 2001
From: Charles Overbeck <coverbec@ucsc.edu>
Date: Wed, 20 Jul 2022 09:18:16 -0700
Subject: [PATCH] Scaffolding for #26 -- test fails.

Needed to update the dockstore.version for it to build;
I think we cleaned out our Maven repo.
---
 pom.xml                                           |  2 +-
 .../GalaxyWorkflowLanguagePluginTest.java         | 15 +++++++++++++++
 2 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 8e8870fc..26acd305 100644
--- a/pom.xml
+++ b/pom.xml
@@ -10,7 +10,7 @@
 
     <properties>
         <github.url>scm:git:git@github.com:galaxyproject/dockstore-galaxy-interface.git</github.url>
-        <dockstore.version>1.9.0-alpha.1</dockstore.version>
+        <dockstore.version>1.12.0</dockstore.version>
         <slf4j.version>1.7.26</slf4j.version>
         <plugin.id>${project.artifactId}</plugin.id>
         <plugin.class>org.galaxyproject.dockstore_galaxy_interface.language.GalaxyWorkflowPlugin</plugin.class>
diff --git a/src/test/java/org/galaxyproject/dockstore_galaxy_interface/language/GalaxyWorkflowLanguagePluginTest.java b/src/test/java/org/galaxyproject/dockstore_galaxy_interface/language/GalaxyWorkflowLanguagePluginTest.java
index 2478fd91..07a3379b 100644
--- a/src/test/java/org/galaxyproject/dockstore_galaxy_interface/language/GalaxyWorkflowLanguagePluginTest.java
+++ b/src/test/java/org/galaxyproject/dockstore_galaxy_interface/language/GalaxyWorkflowLanguagePluginTest.java
@@ -159,6 +159,21 @@ public void testTwoValidationIssues() {
     Assert.assertTrue(validationProblem.contains("- .. WARNING"));
   }
 
+  @Test
+  public void testPrestoImmuneValidation() {
+    final GalaxyWorkflowPlugin.GalaxyWorkflowPluginImpl plugin =
+        new GalaxyWorkflowPlugin.GalaxyWorkflowPluginImpl();
+    final ResourceFileReader reader = new ResourceFileReader("nebiolabs");
+    final String initialPath = "presto_immune_sequencing_v3.20.ga";
+    final String contents = reader.readFile(initialPath);
+    final Map<String, Pair<String, MinimalLanguageInterface.GenericFileType>> fileMap =
+        plugin.indexWorkflowFiles(initialPath, contents, reader);
+    Assert.assertEquals(0, fileMap.size());
+    final VersionTypeValidation wfValidation =
+        plugin.validateWorkflowSet(initialPath, contents, fileMap);
+    Assert.assertTrue(wfValidation.isValid());
+  }
+
   @Test
   public void testInitialPathPattern() {
     // TODO: This doesn't seem to be called by Dockstore anywhere - is that right?