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Storing log file in: /var/folders/bm/3wkhsl3j1h747_jm4xthmh980000kd/T/ephemeris_C7zD9s
Running data managers that populate the following source data tables: ['all_fasta']
Running data managers that index sequences.
Traceback (most recent call last):
File "/Users/lecorguille/.venv_planemo/bin/run-data-managers", line 11, in <module>
sys.exit(main())
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/ephemeris/run_data_managers.py", line 314, in main
data_managers.run(log, args.ignore_errors, args.overwrite)
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/ephemeris/run_data_managers.py", line 274, in run
run_jobs(self.index_jobs, self.skipped_index_jobs)
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/ephemeris/run_data_managers.py", line 256, in run_jobs
tool_inputs=job["inputs"])
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/bioblend/galaxy/tools/__init__.py", line 127, in run_tool
return self._tool_post(payload)
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/bioblend/galaxy/tools/__init__.py", line 233, in _tool_post
return self._post(payload, files_attached=files_attached)
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/bioblend/galaxy/client.py", line 152, in _post
files_attached=files_attached)
File "/Users/lecorguille/.venv_planemo/lib/python2.7/site-packages/bioblend/galaxyclient.py", line 146, in make_post_request
body=r.text, status_code=r.status_code)
bioblend.ConnectionError: Unexpected HTTP status code: 400: {"err_msg": "Tool not found or not accessible.", "err_code": 0}
The tool seems installed
Any idea?
Other question: do you know why ['all_fasta'] in Running data managers that populate the following source data tables: ['all_fasta']?
The text was updated successfully, but these errors were encountered:
The id looks correct, is this an admin API key (It can't be the master API key) ?
Other question: do you know why ['all_fasta'] in Running data managers that populate the following source data tables: ['all_fasta']?
Data managers creating entries in all_fasta are always run first. The entries produced by them may be inputs to the next data manager ... it's not that this is actually run though, it's just a confusing log message.
The id looks correct, is this an admin API key (It can't be the master API key) ?
AH!
It's indeed better with my API key.
In the context of CI, the master API key was a good solution.
I guess that we will create a "fake" admin account
My run_data_managers.yaml
The std
The tool seems installed
Any idea?
Other question: do you know why
['all_fasta']
inRunning data managers that populate the following source data tables: ['all_fasta']
?The text was updated successfully, but these errors were encountered: