diff --git a/content/events/gcc2023/abstracts/index.md b/content/events/gcc2023/abstracts/index.md index 59e60172ef..369b9667b3 100644 --- a/content/events/gcc2023/abstracts/index.md +++ b/content/events/gcc2023/abstracts/index.md @@ -5,12 +5,12 @@ autotoc: false
- - Register now + + Join GCC2023 Slack ◇ - - Preview the program + + View abstract book
@@ -41,7 +41,7 @@ register and be available on Zoom/Slack during their scheduled session. | ~~Jun 2~~ | Abstracts due for posters/demos | | ~~Jun 12~~ | Poster/demo acceptance announcements | | ~~Jun 26~~ | Deadline for submitting your accepted poster to the organizers | -| Jul 1 | Deadline for submitting slides for your talk to the organizers | +| ~~Jul 1~~ | Deadline for submitting slides for your talk to the organizers | ## Poster details @@ -61,10 +61,6 @@ Complete details about creating a poster from the venue IT are available in [this PDF](https://drive.google.com/file/d/1hrPtuuvvhkbEt1eoFIlh9JKAS8ncDDSH/view?usp=sharing). -Because the venue IT department will roll out the posters to the monitors, **you -will need to upload your poster to the [Google Drive -folder](https://drive.google.com/drive/folders/1G7oFQyjtcZ6yLK7wt8Njg7sBa777d1BO?usp=sharing) -by June 26, 2023**. ### Virtual poster presenters @@ -75,7 +71,7 @@ you do the following 2 things to help increase the impact of your poster: Please do both of these steps no later than July 9. -To start, please first join the [conferene +To start, please first join the [conference Slack](https://join.slack.com/t/gcc2023/shared_invite/zt-1ptuyxw02-QHSHuHdyogdhSY~dxqnTXg). Then join the the [#poster-chat channel](https://gcc2023.slack.com/archives/C058E0U8UC9) and upload your poster. @@ -84,13 +80,13 @@ will use this channel for (asynchronous) communication about the posters so please initiate and monitor activity. For the short video, this is your opportunity to share enthusiasm for your work -and give the poster a persona. The video. is intended as an overview to capture -attention so there is not need (or time) to go into every detail. The goal is to -initiate conversation. inslack after someone has watched your video. So go -ahead, practive your [elevator +and give the poster a persona. The video is intended as an overview to capture +attention so there is no need (or time) to go into every detail. The goal is to +initiate a conversation in Slack after someone has watched your video. So go +ahead, practice your [elevator pitch](https://www.thebalancemoney.com/elevator-speech-examples-and-writing-tips-2061976) -and create the video. Once you have it, upload it to Slack as well (best to do -this as a threaded reply to your poster message so they are kept together). +and create the video. Once you have it, upload it to Slack (best to do +this as a threaded reply with your poster message so they are kept together).
QUT Cube @@ -113,9 +109,9 @@ the audience). Short talks will be 7 minutes total. Because GCC2023 is a hybrid event with virtual participants, the organizers will need to ensure all the slides for talks are uniformly available for remote attendees. Hence, **we ask that you create your slides in [Google -Slides](https://slides.google.com)** and share the slide deck with *anyone with the -link* (in view-only mode). Then, **share that link with Enis Afgan and Jenn Vessio -via email by July 1, 2023**. +Slides](https://slides.google.com) and share the slide deck with *anyone with +the link* (in view-only mode), and provide a link in [this +spreadsheet](https://docs.google.com/spreadsheets/d/13Cs1ZgUkxN3Al9tfmNFzDYgxH7T-sa6YS6_vppMhJJE/edit#gid=0)**. # Birds of a Feather (BoF) sessions diff --git a/content/events/gcc2023/fellowships/index.md b/content/events/gcc2023/fellowships/index.md index 4868374b2d..0e30c07d24 100644 --- a/content/events/gcc2023/fellowships/index.md +++ b/content/events/gcc2023/fellowships/index.md @@ -32,7 +32,7 @@ The following are a list of key dates for the fellowship application process: | ~~April 14~~ | [Application deadline for in-person fellowships](https://docs.google.com/forms/d/e/1FAIpQLSdaA3EGI3LwEpWZfThSCA87DHKag7hSg1bhm-UUQfswkDWszQ/viewform) | | ~~May 25~~ | Review results returned to applicants | | ~~June 2~~ | [Application deadline for virtual fellowships](https://docs.google.com/forms/d/e/1FAIpQLSdaA3EGI3LwEpWZfThSCA87DHKag7hSg1bhm-UUQfswkDWszQ/viewform) | -| June 12 | Review results returned to applicants | +| ~~June 12~~ | Review results returned to applicants | ## Selection process diff --git a/content/events/gcc2023/index.md b/content/events/gcc2023/index.md index c49f6a90db..173af108a3 100644 --- a/content/events/gcc2023/index.md +++ b/content/events/gcc2023/index.md @@ -30,15 +30,21 @@ subsites: [all] #### [#UseGalaxy2023](https://twitter.com/hashtag/UseGalaxy2023) - - Register now - -◇ - - Preview the program - +
+ + Join GCC2023 Slack + + ◇ + + View abstract book + +
+ + +## Event highlights +
@@ -60,8 +66,8 @@ Galaxy community.
- -
+ +
diff --git a/content/events/gcc2023/key-dates/index.md b/content/events/gcc2023/key-dates/index.md index c6841e7548..59cf6af4fb 100644 --- a/content/events/gcc2023/key-dates/index.md +++ b/content/events/gcc2023/key-dates/index.md @@ -21,8 +21,8 @@ following are tentative dates which may still change. | ~~Jun 12~~ | Poster/demo acceptance announcements | | ~~Jun 16~~ | [Regular registration closes / Late registration opens](/events/gcc2023/register/) | | ~~Jun 26~~ | Deadline for submitting your accepted poster to the organizers | -| Jul 1 | Deadline for submitting slides for your talk to the organizers | -| Jul 6 | Deadline for registering a BoF (extended from Jun 22) | +| ~~Jul 1~~ | Deadline for submitting slides for your talk to the organizers | +| ~~Jul 5~~ | Deadline for registering a BoF (extended from Jun 22) | | Jul 10 | Conference starts! | | Jul 14 | CoFest starts | | Jul 16 | Last day of GCC2023 | diff --git a/content/events/gcc2023/register/index.md b/content/events/gcc2023/register/index.md index 9972fa3093..272198aaae 100644 --- a/content/events/gcc2023/register/index.md +++ b/content/events/gcc2023/register/index.md @@ -4,26 +4,17 @@ autotoc: false -
- - Register now - - ◇ - - Preview the program - -
# Registration -Conference registration is handled via an Eventbrite portal. Click the -`Register now` button above to access the portal. After registering, you will +**[Conference registration is handled via Eventbrite +portal](https://gcc-2023.eventbrite.com.au/)**. After registering, you will receive a confirmation email with the registration details. ## Meeting: July 10-13 -The general meeting portion of GCC2023 will consist of a series of peer-reviewed +The general meeting portion of GCC2023 consist of a series of peer-reviewed talks, posters, demos, training, Birds-of-a-Feather meetups, and sponsor sessions. The registration fee includes admission to the meeting events, morning/afternoon diff --git a/content/events/gcc2023/schedule/index.md b/content/events/gcc2023/schedule/index.md index e157998267..bf6c0b4ef4 100644 --- a/content/events/gcc2023/schedule/index.md +++ b/content/events/gcc2023/schedule/index.md @@ -4,6 +4,16 @@ autotoc: false +
+ + Join GCC2023 Slack + + ◇ + + View abstract book + +
+ # Program @@ -34,13 +44,13 @@ document](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ | | 11:20 - 12:30 | [Talks session 1: New Galaxy Features](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.jjplbxp44h8q)| | | 13:30 - 16:20 | Hands-on training 1
- Machine Learning
- Workflow Development
- Galaxy + R
- Intro to Genomics
- Single Cell Transcriptomics | | | 16:25 - 17:20 | [Talks session 2: Success Stories with Galaxy](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.k0mlxy88v0z7) | -| | 17:20 - 18:30 | [BOFs](#birds-of-a-feather-bof-sessions) | -| Tuesday, July 11 | 9:00 - 9:10 | Tribute to [Simon Gladman](https://www.biocommons.org.au/news/simon-gladman) | -| | 9:10 - 10:10 | [Talks session 3: Galaxy Education](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.jn19e27s2on0) | -| | 10:10 - 11:20 | [Posters & Demos session 2](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.rgkgup5q8me5) | -| | 11:20 - 11:45 | Platinum sponsor talk: [BizData](https://www.bizdata.com.au/)| +| | 17:30 - 18:30 | [BOFs](#birds-of-a-feather-bof-sessions) | +| Tuesday, July 11 | 9:00 - 10:00 | [Talks session 3: Galaxy Education](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.jn19e27s2on0) | +| | 10:00 - 11:10 | [Posters & Demos session 2](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.rgkgup5q8me5) | +| | 11:10 - 11:35 | Platinum sponsor talk: [BizData](https://www.bizdata.com.au/)| +| | 11:35 - 11:45 | Tribute to [Simon Gladman](https://www.biocommons.org.au/news/simon-gladman) | | | 11:45 - 12:30 | Community update talk | -| | 13:30 - 16:20 | Hands-on training 2
- Tool Development
- Admin Roundtable
- Galaxy Tips and Tricks
- Genome Annotation
- Structural Biology and Alphafold | +| | 13:30 - 16:20 | Hands-on training 2
- [Tool Development](https://training.galaxyproject.org/training-material/topics/dev/tutorials/tool-from-scratch/tutorial.html)
- Admin Roundtable
- Galaxy Tips and Tricks
- Genome Annotation
- Structural Biology and Alphafold | | | 16:25 - 17:30 | [Talks session 4: New Communities](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.68zj43i1b7bz)| | | 17:30 - 18:30 | [BOFs](#birds-of-a-feather-bof-sessions) | | Wednesday, July 12 | 9:00 - 9:20 | Sign-up and organization of the koala sanctuary visit | @@ -53,10 +63,10 @@ document](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ | | 9:10 - 10:10 | Keynote 3: [Roberto Barrero](#biodiversity-1)
*Improving plant industry access to new genetics through faster and more accurate diagnostics of plant viruses and viroids* | | | 10:10 - 11:20 | [Talks session 6: Galaxy UI/UX](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.lt99r0b318s5) | | | 11:20 - 12:30 | [Talks session 7: Playing Nice with Everyone](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.nw9l5nnrz89k) | -| | 13:30 - 16:20 | Hands-on training 3
- Contributing to the GTN
- Dev Small Groups
- Microbiology
- Genome Assembly with VGP
- Galaxy for Human Genetics | +| | 13:30 - 16:20 | Hands-on training 3
- [Contributing to the GTN](https://training.galaxyproject.org/training-material/topics/contributing/)
- Dev Small Groups
- Microbiology
- [Genome Assembly with VGP](https://training.galaxyproject.org/training-material/topics/assembly/tutorials/vgp_workflow_training/tutorial.html)
- [Galaxy for Human Genetics](https://jhudatascience.org/GDSCN_Book_SARS_Galaxy_on_AnVIL/index.html) | | | 16:25 - 17:10 | [Talks session 8: Looking Ahead](https://docs.google.com/document/d/1xJVtNlN3D0yEZceoPb0CcdxtXP0Rx0FUo_ixU38wqlA/edit#heading=h.tdri0hju7bvj) | | | 17:10 - 17:20 | Conference closing | -| | 17:20 - 18:30 | [BOFs](#birds-of-a-feather-bof-sessions) | +| | 17:30 - 18:30 | [BOFs](#birds-of-a-feather-bof-sessions) | | Friday - Sunday | 09:00 - 17:00 | CoFest | @@ -214,7 +224,7 @@ being planned: Topic title - Galaxy & Mass Spectrometry + Microbial data analysis in Galaxy @@ -222,7 +232,7 @@ being planned: Date & time - TBD + Monday, 17:30-18:30 @@ -230,7 +240,7 @@ being planned: Organizers - pjagtap@umn.edu, johan@biocommons.org.au + berenice.batut@gmail.com, saskiahiltemann@gmail.com @@ -238,10 +248,13 @@ being planned: Topic summary - Galaxy communities and researchers interested in proteomics, - metabolomics, and imaging mass spectrometry will discuss software - tools, workflows, new methods, workshops, and topics related to - mass spectrometry. + Many efforts on microbial analysis are done in Galaxy. To avoid redundancy and + coordinate our efforts, we started microGalaxy, a community focusing on + microbial analysis with Galaxy. Whether you are analysing microbiome samples or + bacterial isolates, long reads or short, shotgun or 16S, genomics + transcriptomics or proteomics, this is the place to be!
+ We organized quarterly community meeting. What a best occasion than GCC and a + BoF for our next meeting? Anyone interested is welcome to join. @@ -254,7 +267,7 @@ being planned: Topic title - Workflows + Data-Driven Decision-Making Metrics on UseGalaxy @@ -262,7 +275,7 @@ being planned: Date & time - TBD + Monday, 17:30-18:30 @@ -270,7 +283,7 @@ being planned: Organizers - johan@biocommons.org.au, ziad@biocommons.org.au, g.price@qcif.edu.au + Michelle.Savage@jhmi.edu, enis.afgan@gmail.com @@ -278,11 +291,16 @@ being planned: Topic summary - The BoF will cover workflow best practices in Galaxy: including for example, - easier / standard file naming instructions inside workflows (could these be made - easier to use https://galaxyproject.org/learn/advanced-workflow/variables/ ?). - We will also discuss FAIR workflows, and how to support Galaxy users to find and - reuse workflows across instances by using registries. + Globally, modern community-based websites rely on data metrics to make informed + decisions on new and existing features. During this UseGalaxy knowledge-sharing + session, we will (1) outline real-world examples (past, present, future) where + data-driven decision-making metrics would benefit the UseGalaxy community and + (2) build/edit a glossary for these metrics' terminology and calculations with + the guidance of existing key metrics already in use and those that may need to + be created.
+ For transparency, we welcome UseGalaxy team members from all major hub sites, + although it is not necessary to get consensus across sites. We also welcome any + attendee with vested interest on the topic or just curious. @@ -295,7 +313,7 @@ being planned: Topic title - Power Users of Galaxy + Walking tour of QUT & South Bank @@ -303,7 +321,7 @@ being planned: Date & time - TBD + Monday, 17:30-18:30 @@ -311,7 +329,7 @@ being planned: Organizers - a.ostrovsky@mac.com, dannon.baker@gmail.com + g.price@qcif.edu.au @@ -319,12 +337,7 @@ being planned: Topic summary - Galaxy power users have a unique and valuable perspective on Galaxy's quirks. - Many of our users run Galaxy for large-scale projects, or use it enough across - many of their analyses that they notice changes or improvements others might - miss. If you are experienced with Galaxy and have noticed pain points, or if you - have an idea as to how to make your experience smoother or improved in some way, - we want to talk to you! + Take a walk with the locals to show you some of the city and QUT highlights. @@ -345,7 +358,7 @@ being planned: Date & time - TBD + Tuesday, 17:30-18:30 @@ -382,7 +395,7 @@ being planned: Topic title - Data-Driven Decision-Making Metrics on UseGalaxy + Workflows @@ -390,7 +403,7 @@ being planned: Date & time - TBD + Tuesday, 17:30-18:30 @@ -398,7 +411,7 @@ being planned: Organizers - Michelle.Savage@jhmi.edu, enis.afgan@gmail.com + johan@biocommons.org.au, ziad@biocommons.org.au @@ -406,16 +419,169 @@ being planned: Topic summary - Globally, modern community-based websites rely on data metrics to make informed - decisions on new and existing features. During this UseGalaxy knowledge-sharing - session, we will (1) outline real-world examples (past, present, future) where - data-driven decision-making metrics would benefit the UseGalaxy community and - (2) build/edit a glossary for these metrics' terminology and calculations with - the guidance of existing key metrics already in use and those that may need to - be created.
- For transparency, we welcome UseGalaxy team members from all major hub sites, - although it is not necessary to get consensus across sites. We also welcome any - attendee with vested interest on the topic or just curious. + The BoF will cover workflow best practices in Galaxy: including for example, + easier / standard file naming instructions inside workflows (could these be made + easier to use https://galaxyproject.org/learn/advanced-workflow/variables/ ?). + We will also discuss FAIR workflows, and how to support Galaxy users to find and + reuse workflows across instances by using registries. + + + + + + + + + + + + + + + + + + + + + + + + +
+ Topic title + + Remembering Simon with board games +
+ Date & time + + Tuesday, 17:30-18:30 +
+ Organizers + + g.price@qcif.edu.au +
+ Topic summary + + Let's play some board games, which Simon loved so we'll remember the good times with him. +
+ + + + + + + + + + + + + + + + + + + + +
+ Topic title + + Galaxy & Mass Spectrometry +
+ Date & time + + Thursday, 17:30-18:30 +
+ Organizers + + pjagtap@umn.edu, johan@biocommons.org.au +
+ Topic summary + + Galaxy communities and researchers interested in proteomics, + metabolomics, and imaging mass spectrometry will discuss software + tools, workflows, new methods, workshops, and topics related to + mass spectrometry. +
+ + + + + + + + + + + + + + + + + + + + + +
+ Topic title + + Power Users of Galaxy +
+ Date & time + + Thursday, 17:30-18:30 +
+ Organizers + + a.ostrovsky@mac.com, dannon.baker@gmail.com +
+ Topic summary + + Galaxy power users have a unique and valuable perspective on Galaxy's quirks. + Many of our users run Galaxy for large-scale projects, or use it enough across + many of their analyses that they notice changes or improvements others might + miss. If you are experienced with Galaxy and have noticed pain points, or if you + have an idea as to how to make your experience smoother or improved in some way, + we want to talk to you! +
+ + + + + + + + + + + + + + + + + + diff --git a/content/events/gcc2023/travel/index.md b/content/events/gcc2023/travel/index.md index 03da639dff..f72f14c21f 100644 --- a/content/events/gcc2023/travel/index.md +++ b/content/events/gcc2023/travel/index.md @@ -54,9 +54,9 @@ idea to save an offline map of Brisbane on your phone to ease navigation. ## Venue -GCC2023 will be held at the [Queensland University of +**GCC2023 is held at the [Queensland University of Technology](https://www.qut.edu.au/) (QUT) [Gardens Point -campus](https://www.qut.edu.au/about/campuses-and-facilities/gardens-point-campus). +campus](https://www.qut.edu.au/about/campuses-and-facilities/gardens-point-campus)**. This is a beautiful location in the center of the city and right on the Brisbane river. This campus is serviced by multiple bus routes, a short walk from Central Station (through the city) and South Bank station (a short walk across a
+ Topic title + + Logan Road Pub Crawl and Arcade Games / Pinball +
+ Date & time + + Thursday, from 17:30 +
+ Organizers + + g.price@qcif.edu.au +
+ Topic summary + + Step into the world of bars, arcade, and pinball at Pincadia + for an evening of entertainment.