diff --git a/content/news/2021-03-01-gat/index.md b/content/news/2021-03-01-gat/index.md new file mode 100644 index 0000000000..f3fc0c5392 --- /dev/null +++ b/content/news/2021-03-01-gat/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-01" +tags: [training, gtn-news] +title: "[GTN news] Galaxy Admin Training Success" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/01/gat.html' +--- + +The Galaxy Admins and the GTN instructors community has just run the largest-ever Galaxy Admin training event. + diff --git a/content/news/2021-03-16-slides_to_videos/index.md b/content/news/2021-03-16-slides_to_videos/index.md new file mode 100644 index 0000000000..edd6b13812 --- /dev/null +++ b/content/news/2021-03-16-slides_to_videos/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-16" +tags: [training, gtn-news] +title: "[GTN news] New Feature: Automatic Slides-to-video conversion" +authors: "Helena Rasche, Delphine Lariviere" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/16/slides_to_videos.html' +--- + +This past year has been a struggle for all of us, but one task has become apparent as one of the most time consuming portions of course preparation during a pandemic: Video Production. + diff --git a/content/news/2021-03-17-galaxy_release/index.md b/content/news/2021-03-17-galaxy_release/index.md new file mode 100644 index 0000000000..6e60aaab3f --- /dev/null +++ b/content/news/2021-03-17-galaxy_release/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-17" +tags: [training, gtn-news] +title: "[GTN news] Galaxy 21.01 released!" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/17/galaxy_release.html' +--- + +The Galaxy Team is pleased to announce the release of Galaxy 21.01! Workflows are the absolute ✨star✨, followed closely by the new Remote Files interface and much more. + diff --git a/content/news/2021-03-17-smorgasbord_report/index.md b/content/news/2021-03-17-smorgasbord_report/index.md new file mode 100644 index 0000000000..297e82f508 --- /dev/null +++ b/content/news/2021-03-17-smorgasbord_report/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-17" +tags: [training, gtn-news] +title: "[GTN news] Report on the GTN Smörgåsbord event" +authors: "Saskia Hiltemann, Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/17/smorgasbord_report.html' +--- + +The GTN instructors community has just run the largest-ever Galaxy training event: “the GTN Smörgåsbord: A Global Galaxy Course”, co-organized with the Gallantries and the CINECA project and the Galaxy Training Network. + diff --git a/content/news/2021-03-18-gcc2021-virtual-edition/index.md b/content/news/2021-03-18-gcc2021-virtual-edition/index.md new file mode 100644 index 0000000000..6ff71bf9f9 --- /dev/null +++ b/content/news/2021-03-18-gcc2021-virtual-edition/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] Galaxy Community Conference 2021" +authors: "Saskia Hiltemann" +external: 'https://training.galaxyproject.orghttps://www.vibconferences.be/events/gcc2021-virtual-edition' +--- + +This is an external post, please follow the link to read it. + diff --git a/content/news/2021-03-18-gtn_cofest_may/index.md b/content/news/2021-03-18-gtn_cofest_may/index.md new file mode 100644 index 0000000000..ce2337742b --- /dev/null +++ b/content/news/2021-03-18-gtn_cofest_may/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] Next GTN CoFest May 20, 2021" +authors: "Saskia Hiltemann, Helena Rasche, Bérénice Batut, Jennifer Hillman-Jackson, Delphine Lariviere, Anna Syme, Maria Doyle" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/18/gtn_cofest_may.html' +--- + +Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome! + diff --git a/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md b/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md new file mode 100644 index 0000000000..83f08c137b --- /dev/null +++ b/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] New Tutorial: Object tracking using CellProfiler" +authors: "Beatriz Serrano-Solano, Yi Sun, Jean-Karim Hériché" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/18/tutorial_imaging_cell_profiler.html' +--- + +Most biological processes are dynamic and observing them over time can provide valuable insights. Combining fluorescent markers with time-lapse imaging is a common approach to collect data on dynamic cellular processes such as cell division. However, automated time-lapse imaging can produce large amounts of data that can be challenging to process. One of these challenges is the tracking of individual objects as it is often impossible to manually follow a large number of objects over many time points. + diff --git a/content/news/2021-03-24-faqs/index.md b/content/news/2021-03-24-faqs/index.md new file mode 100644 index 0000000000..5fe78b603e --- /dev/null +++ b/content/news/2021-03-24-faqs/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-24" +tags: [training, gtn-news] +title: "[GTN news] New Feature: FAQs" +authors: "Saskia Hiltemann, Helena Rasche, Bérénice Batut" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/24/faqs.html' +--- + +Snippets have received an major overhaul! Snippets/FAQs are small reusable bits of training, often answering a single question. In addition to the general Galaxy snippets, we now also support topic-level and tutorial-level FAQs. This will allow contributors to add common questions and answers to their tutorials, which not only can be included in the tutorial text itself, but are also used to autogenerate an FAQ page for the tutorial or topic listing all common questions (and answers).This will be useful both to participants following tutorials via self-study, and also to instructors preparing for a training event. + diff --git a/content/news/2021-03-24-tutorial_assembly_mrsa/index.md b/content/news/2021-03-24-tutorial_assembly_mrsa/index.md new file mode 100644 index 0000000000..bc422006bb --- /dev/null +++ b/content/news/2021-03-24-tutorial_assembly_mrsa/index.md @@ -0,0 +1,17 @@ + --- + site: [all] + date: "2021-03-24" + tags: [training, gtn-news] + title: "[GTN news] New Tutorials: Genome assembly of a MRSA genome" + authors: "Bazante Sanders, Miaomiao Zhou, Helena Rasche, Saskia Hiltemann" + external: 'https://training.galaxyproject.org/training-material/news/2021/03/24/tutorial_assembly_mrsa.html' + --- + + Two new assembly tutorials have been added to the GTN! These tutorials walk you through the +process of assembling MRSA strains from real-world datasets. MRSA stands for “Methicillin- +resistant Staphylococcus aureus, it is resistance to several antibiotics and is a common +source of hospital-acquired infections and outbreaks. In this tutorial you will assess the +quality of your data, perform an assembly and assess its quality, analyze your data for the +presence of antimicrobial resistance (AMR) genes, and annotate the genome using Prokka and +JBrowse. + diff --git a/content/news/2021-03-30-tutorial_scrna_plant/index.md b/content/news/2021-03-30-tutorial_scrna_plant/index.md new file mode 100644 index 0000000000..2d22171390 --- /dev/null +++ b/content/news/2021-03-30-tutorial_scrna_plant/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-30" +tags: [training, gtn-news] +title: "[GTN news] New Tutorial: Downstream Single-cell RNA Plant analysis with ScanPy" +authors: "Mehmet Tekman, Beatriz Serrano-Solano" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/30/tutorial_scrna_plant.html' +--- + +Single cell RNA-seq analysis is a cornerstone of developmental research and provides a great level of detail in understanding the underlying dynamic processes within tissues. In the context of plants, this highlights some of the key differentiation pathways that root cells undergo. + diff --git a/content/news/2021-04-06-new-video-player/index.md b/content/news/2021-04-06-new-video-player/index.md new file mode 100644 index 0000000000..76e6f010ac --- /dev/null +++ b/content/news/2021-04-06-new-video-player/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-04-06" +tags: [training, gtn-news] +title: "[GTN news] New Feature: Video Player" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/04/06/new-video-player.html' +--- + +One of our contributors (Mehmet Tekman) found himself wanting to link to a specific time point in a video. We said “Wow, what a fantastic idea!” and then we implemented it. To support that we developed a very simple standalone video player page where you can view the GTN videos and browse through our catalog. It features the full transcript on the left, some suggested videos on the right, and a very standard