From de87a87156f61a26228326caaf2153fc0fac13ef Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 01/28] Post 2021-03-01-gat from GTN --- content/news/2021-03-01-gat/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-01-gat/index.md diff --git a/content/news/2021-03-01-gat/index.md b/content/news/2021-03-01-gat/index.md new file mode 100644 index 0000000000..f3fc0c5392 --- /dev/null +++ b/content/news/2021-03-01-gat/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-01" +tags: [training, gtn-news] +title: "[GTN news] Galaxy Admin Training Success" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/01/gat.html' +--- + +The Galaxy Admins and the GTN instructors community has just run the largest-ever Galaxy Admin training event. + From 57c23481e44bf7e0c33c0fdebf5f2c9ce991defe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 02/28] Post 2021-03-16-slides_to_videos from GTN --- content/news/2021-03-16-slides_to_videos/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-16-slides_to_videos/index.md diff --git a/content/news/2021-03-16-slides_to_videos/index.md b/content/news/2021-03-16-slides_to_videos/index.md new file mode 100644 index 0000000000..edd6b13812 --- /dev/null +++ b/content/news/2021-03-16-slides_to_videos/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-16" +tags: [training, gtn-news] +title: "[GTN news] New Feature: Automatic Slides-to-video conversion" +authors: "Helena Rasche, Delphine Lariviere" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/16/slides_to_videos.html' +--- + +This past year has been a struggle for all of us, but one task has become apparent as one of the most time consuming portions of course preparation during a pandemic: Video Production. + From fef9f792dad63f2a3beb132580c865cd43504799 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 03/28] Post 2021-03-17-galaxy_release from GTN --- content/news/2021-03-17-galaxy_release/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-17-galaxy_release/index.md diff --git a/content/news/2021-03-17-galaxy_release/index.md b/content/news/2021-03-17-galaxy_release/index.md new file mode 100644 index 0000000000..6e60aaab3f --- /dev/null +++ b/content/news/2021-03-17-galaxy_release/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-17" +tags: [training, gtn-news] +title: "[GTN news] Galaxy 21.01 released!" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/17/galaxy_release.html' +--- + +The Galaxy Team is pleased to announce the release of Galaxy 21.01! Workflows are the absolute ✨star✨, followed closely by the new Remote Files interface and much more. + From b887bf815ab2136fd75099cacea7a45a6412e583 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 04/28] Post 2021-03-17-smorgasbord_report from GTN --- content/news/2021-03-17-smorgasbord_report/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-17-smorgasbord_report/index.md diff --git a/content/news/2021-03-17-smorgasbord_report/index.md b/content/news/2021-03-17-smorgasbord_report/index.md new file mode 100644 index 0000000000..297e82f508 --- /dev/null +++ b/content/news/2021-03-17-smorgasbord_report/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-17" +tags: [training, gtn-news] +title: "[GTN news] Report on the GTN Smörgåsbord event" +authors: "Saskia Hiltemann, Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/17/smorgasbord_report.html' +--- + +The GTN instructors community has just run the largest-ever Galaxy training event: “the GTN Smörgåsbord: A Global Galaxy Course”, co-organized with the Gallantries and the CINECA project and the Galaxy Training Network. + From 28cbd1fcdc8bd1718878787b9a1b0b4b28104d60 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 05/28] Post 2021-03-18-gcc2021-virtual-edition from GTN --- .../news/2021-03-18-gcc2021-virtual-edition/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-18-gcc2021-virtual-edition/index.md diff --git a/content/news/2021-03-18-gcc2021-virtual-edition/index.md b/content/news/2021-03-18-gcc2021-virtual-edition/index.md new file mode 100644 index 0000000000..6ff71bf9f9 --- /dev/null +++ b/content/news/2021-03-18-gcc2021-virtual-edition/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] Galaxy Community Conference 2021" +authors: "Saskia Hiltemann" +external: 'https://training.galaxyproject.orghttps://www.vibconferences.be/events/gcc2021-virtual-edition' +--- + +This is an external post, please follow the link to read it. + From d47b3bbcfe358771b6caac824d345a429bfe49b5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 06/28] Post 2021-03-18-gtn_cofest_may from GTN --- content/news/2021-03-18-gtn_cofest_may/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-18-gtn_cofest_may/index.md diff --git a/content/news/2021-03-18-gtn_cofest_may/index.md b/content/news/2021-03-18-gtn_cofest_may/index.md new file mode 100644 index 0000000000..ce2337742b --- /dev/null +++ b/content/news/2021-03-18-gtn_cofest_may/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] Next GTN CoFest May 20, 2021" +authors: "Saskia Hiltemann, Helena Rasche, Bérénice Batut, Jennifer Hillman-Jackson, Delphine Lariviere, Anna Syme, Maria Doyle" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/18/gtn_cofest_may.html' +--- + +Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome! + From c55b5bb91dc3fa3e9cc51b72b45ec0a92d1ae3bf Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 07/28] Post 2021-03-18-tutorial_imaging_cell_profiler from GTN --- .../index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md diff --git a/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md b/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md new file mode 100644 index 0000000000..83f08c137b --- /dev/null +++ b/content/news/2021-03-18-tutorial_imaging_cell_profiler/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-18" +tags: [training, gtn-news] +title: "[GTN news] New Tutorial: Object tracking using CellProfiler" +authors: "Beatriz Serrano-Solano, Yi Sun, Jean-Karim Hériché" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/18/tutorial_imaging_cell_profiler.html' +--- + +Most biological processes are dynamic and observing them over time can provide valuable insights. Combining fluorescent markers with time-lapse imaging is a common approach to collect data on dynamic cellular processes such as cell division. However, automated time-lapse imaging can produce large amounts of data that can be challenging to process. One of these challenges is the tracking of individual objects as it is often impossible to manually follow a large number of objects over many time points. + From ac81269dbc21cb5500dfc18944aa31f1f72f6ff8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 08/28] Post 2021-03-24-faqs from GTN --- content/news/2021-03-24-faqs/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-24-faqs/index.md diff --git a/content/news/2021-03-24-faqs/index.md b/content/news/2021-03-24-faqs/index.md new file mode 100644 index 0000000000..5fe78b603e --- /dev/null +++ b/content/news/2021-03-24-faqs/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-24" +tags: [training, gtn-news] +title: "[GTN news] New Feature: FAQs" +authors: "Saskia Hiltemann, Helena Rasche, Bérénice Batut" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/24/faqs.html' +--- + +Snippets have received an major overhaul! Snippets/FAQs are small reusable bits of training, often answering a single question. In addition to the general Galaxy snippets, we now also support topic-level and tutorial-level FAQs. This will allow contributors to add common questions and answers to their tutorials, which not only can be included in the tutorial text itself, but are also used to autogenerate an FAQ page for the tutorial or topic listing all common questions (and answers).This will be useful both to participants following tutorials via self-study, and also to instructors preparing for a training event. + From 0d74634d078e9ae3b1665ffa907ee9531d873d08 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 09/28] Post 2021-03-24-tutorial_assembly_mrsa from GTN --- .../2021-03-24-tutorial_assembly_mrsa/index.md | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 content/news/2021-03-24-tutorial_assembly_mrsa/index.md diff --git a/content/news/2021-03-24-tutorial_assembly_mrsa/index.md b/content/news/2021-03-24-tutorial_assembly_mrsa/index.md new file mode 100644 index 0000000000..bc422006bb --- /dev/null +++ b/content/news/2021-03-24-tutorial_assembly_mrsa/index.md @@ -0,0 +1,17 @@ + --- + site: [all] + date: "2021-03-24" + tags: [training, gtn-news] + title: "[GTN news] New Tutorials: Genome assembly of a MRSA genome" + authors: "Bazante Sanders, Miaomiao Zhou, Helena Rasche, Saskia Hiltemann" + external: 'https://training.galaxyproject.org/training-material/news/2021/03/24/tutorial_assembly_mrsa.html' + --- + + Two new assembly tutorials have been added to the GTN! These tutorials walk you through the +process of assembling MRSA strains from real-world datasets. MRSA stands for “Methicillin- +resistant Staphylococcus aureus, it is resistance to several antibiotics and is a common +source of hospital-acquired infections and outbreaks. In this tutorial you will assess the +quality of your data, perform an assembly and assess its quality, analyze your data for the +presence of antimicrobial resistance (AMR) genes, and annotate the genome using Prokka and +JBrowse. + From 7c644f666fb12757141d0bfea685372088163efe Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:39 +0200 Subject: [PATCH 10/28] Post 2021-03-30-tutorial_scrna_plant from GTN --- content/news/2021-03-30-tutorial_scrna_plant/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-03-30-tutorial_scrna_plant/index.md diff --git a/content/news/2021-03-30-tutorial_scrna_plant/index.md b/content/news/2021-03-30-tutorial_scrna_plant/index.md new file mode 100644 index 0000000000..2d22171390 --- /dev/null +++ b/content/news/2021-03-30-tutorial_scrna_plant/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-03-30" +tags: [training, gtn-news] +title: "[GTN news] New Tutorial: Downstream Single-cell RNA Plant analysis with ScanPy" +authors: "Mehmet Tekman, Beatriz Serrano-Solano" +external: 'https://training.galaxyproject.org/training-material/news/2021/03/30/tutorial_scrna_plant.html' +--- + +Single cell RNA-seq analysis is a cornerstone of developmental research and provides a great level of detail in understanding the underlying dynamic processes within tissues. In the context of plants, this highlights some of the key differentiation pathways that root cells undergo. + From be35844732a90cafb0671139e40d1f4432a76e62 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jos=C3=A9=20Manuel=20Dom=C3=ADnguez?= Date: Fri, 7 Jul 2023 13:11:40 +0200 Subject: [PATCH 11/28] Post 2021-04-06-new-video-player from GTN --- content/news/2021-04-06-new-video-player/index.md | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 content/news/2021-04-06-new-video-player/index.md diff --git a/content/news/2021-04-06-new-video-player/index.md b/content/news/2021-04-06-new-video-player/index.md new file mode 100644 index 0000000000..76e6f010ac --- /dev/null +++ b/content/news/2021-04-06-new-video-player/index.md @@ -0,0 +1,11 @@ +--- +site: [all] +date: "2021-04-06" +tags: [training, gtn-news] +title: "[GTN news] New Feature: Video Player" +authors: "Helena Rasche" +external: 'https://training.galaxyproject.org/training-material/news/2021/04/06/new-video-player.html' +--- + +One of our contributors (Mehmet Tekman) found himself wanting to link to a specific time point in a video. We said “Wow, what a fantastic idea!” and then we implemented it. To support that we developed a very simple standalone video player page where you can view the GTN videos and browse through our catalog. It features the full transcript on the left, some suggested videos on the right, and a very standard