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Symbolic links for tests data are not taken into account #1366

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lcottret opened this issue May 9, 2023 · 1 comment
Open

Symbolic links for tests data are not taken into account #1366

lcottret opened this issue May 9, 2023 · 1 comment

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@lcottret
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lcottret commented May 9, 2023

Hi,

I use planemo version 0.75.7 to test my galaxy apps.
For each app, I have a test-app directory where there are some symbolic links that link to files in a directory above.
When I used the version of 0.75.3 of planemo, the symbolic links were well taken into account but with the last version, the symbolic links are not taken into account : the test files are not found anymore.
If I go back to the 0.75.3 version, there is an error message about unicode symbols...

What is the solution so that my tests still run ?
A solution would be to move all symbolic links to actual files but there is a lot of files and it makes not easy the maintenance...

Ludo

@mvdbeek
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mvdbeek commented Jun 6, 2023

What's the error message you're seeing ? If the test data isn't mounted when using docker for testing use --docker_extra_volume to include the parent path.

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