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Fix gifs in Get flanks tool description #597

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millen2223 opened this issue Oct 28, 2021 · 4 comments
Open

Fix gifs in Get flanks tool description #597

millen2223 opened this issue Oct 28, 2021 · 4 comments

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@millen2223
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"Get flanks" tool strangely does not show gifs, has anyone seen that as well?
image
that are located in tool_collections/gops/get_flanks/flanks_ex1.gif

.. image:: flanks_ex1.gif
**Example 2**
- For the following dataset::
chr22 1000 7000 NM_028946 0 -
- running get flanks with Region: Whole, Offset: 200, Flank-length: 300 and Location: Downstream will return **(Orange: Dataset negative strand; Magenta: Flanks output)**::
chr22 500 800 NM_028946 0 -
.. image:: flanks_ex2.gif

Here is tool link to reproduce:
https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0

@millen2223
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@mariipia10
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mariipia10 commented Oct 29, 2021

I checked and it seems to be OK using usegalaxy.org but not the .eu URL as you mention
image

I'm not sure if this is possible, but have you checked if there are any difference in the same file between usegalaxy.eu and usegalaxy.org? Seems like that might be the issue

@millen2223
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@mariipia10 thank you for the review! You are right, it seems like it's the case, but I don't know how if I could look at files for usegalaxy.eu

when I try to load on org. it loads image
the links are the same only servers differ
https://usegalaxy.org/shed_tool_static/toolshed.g2.bx.psu.edu/devteam/get_flanks/get_flanks1/1.0.0/flanks_ex1.gif

and on eu it says.
image
I will read more about it

@mariipia10
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@millen2223 Awesome good luck! Maybe check if there are any other issues that seem to talk about this topic, not sure which might be the invalid parameter it mentions. Maybe its the .eu or .org?

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