gatk4-basic-joint-genotyping.inputs.json

{
  "BasicJointGenotyping.input_gvcfs": [
    "gs://genomics-in-the-cloud/v1/data/germline/gvcfs/mother.g.vcf.gz",
    "gs://genomics-in-the-cloud/v1/data/germline/gvcfs/father.g.vcf.gz",
    "gs://genomics-in-the-cloud/v1/data/germline/gvcfs/son.g.vcf.gz"
  ],
  "BasicJointGenotyping.ref_fasta": "gs://genomics-in-the-cloud/v1/data/germline/ref/ref.fasta",
  "BasicJointGenotyping.ref_fasta_index": "gs://genomics-in-the-cloud/v1/data/germline/ref/ref.fasta.fai",
  "BasicJointGenotyping.ref_dict": "gs://genomics-in-the-cloud/v1/data/germline/ref/ref.dict",
  "BasicJointGenotyping.interval_list": "gs://genomics-in-the-cloud/v1/data/germline/intervals/snippet-intervals-min.list",
  "BasicJointGenotyping.callset_name": "FamilyTrio"
}